diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml index 4f30dcb9..b56f4136 100644 --- a/.github/workflows/build.yml +++ b/.github/workflows/build.yml @@ -1,7 +1,6 @@ name: Build website -on: - push +on: push # Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages permissions: @@ -13,12 +12,12 @@ jobs: jekyll: runs-on: ubuntu-24.04 steps: - - uses: actions/checkout@v4 + - uses: actions/checkout@v6 - name: Install ruby uses: ruby/setup-ruby@v1 with: - ruby-version: '3.4' + ruby-version: "3.4" bundler-cache: true # runs 'bundle install' and caches installed gems automatically - name: Install Typst @@ -40,12 +39,12 @@ jobs: uses: lycheeverse/lychee-action@v2 with: fail: false - args: "--base _site --accept '100..=103,200..=299,403' --cache --max-cache-age 14d _site" + args: --root-dir "$(pwd)/_site" --accept '100..=103,200..=299,403' --cache --max-cache-age 14d _site - name: Upload artifact uses: actions/upload-pages-artifact@v3 with: - path: '_site' + path: "_site" - name: Deploy to GitHub Pages if: github.ref == 'refs/heads/main' id: deployment diff --git a/_bibliography/pubs.bib b/_bibliography/pubs.bib index e36e6190..86cc48ed 100644 --- a/_bibliography/pubs.bib +++ b/_bibliography/pubs.bib @@ -1369,7 +1369,7 @@ @Article{ Tan2024 decomposition}, keywords = {tensors, reviews, computational-example, highlight}, month = {August}, - preprint = {http://arxiv.org/abs/2402.16638}, + preprint = {https://arxiv.org/abs/2402.16638}, url = {https://www.sciencedirect.com/science/article/abs/pii/S2405471224002035}, doi = {10.1016/j.cels.2024.07.004}, pages = {679--693}, diff --git a/_data/service.yaml b/_data/service.yaml index b9c869ab..d0efb1f4 100644 --- a/_data/service.yaml +++ b/_data/service.yaml @@ -208,6 +208,14 @@ service: organization: UCLA Engineering Alumni Reunion date: "2018" profession: + - role: Organizer + organization: Systems Immunology in Transplantation + date: "2024–2025" + + - role: Reviewer + organization: HUB Innovation Grants Program + date: "2025" + - role: Judge organization: Vivli AMR Data Challenge date: "2025" @@ -462,4 +470,4 @@ service: - role: Ad Hoc Reviewer organization: J. Cell Biol. - date: 2011–2012 \ No newline at end of file + date: 2011–2012 diff --git a/_data/thesis-committees.yaml b/_data/thesis-committees.yaml index c21a5202..f8a207cb 100644 --- a/_data/thesis-committees.yaml +++ b/_data/thesis-committees.yaml @@ -214,3 +214,9 @@ committees: advisor: Song Li start_date: 2025 end_date: Present + + - name: Dexter Lai + program: Bioengineering (Ph.D.) + advisor: Song Li + start_date: 2025 + end_date: Present diff --git a/_posts/news/2019-05-15-CSBC-west-coast.md b/_posts/news/2019-05-15-CSBC-west-coast.md index e1d71660..c4063f33 100644 --- a/_posts/news/2019-05-15-CSBC-west-coast.md +++ b/_posts/news/2019-05-15-CSBC-west-coast.md @@ -4,4 +4,4 @@ title: CSBC West Coast Talk date: 2019-05-15 00:00:01 categories: news --- -Drs. Meyer and Bae will present at the [CSBC's Inaugural West Coast Symposium](https://csbconsortium.org/event/inaugural-cancer-systems-biology-consortium-west-coast-symposium/). +Drs. Meyer and Bae will present at the CSBC's Inaugural West Coast Symposium. diff --git a/_posts/news/2020-08-16-autoencoder-pilot.md b/_posts/news/2020-08-16-autoencoder-pilot.md index abba6fe5..0d94ac60 100644 --- a/_posts/news/2020-08-16-autoencoder-pilot.md +++ b/_posts/news/2020-08-16-autoencoder-pilot.md @@ -4,4 +4,4 @@ title: New funding date: 2020-08-16 12:00:00 categories: news --- -The lab has been awarded a pilot grant from the NCI to combine mechanistic models and AI in the form of autoencoders to model patient-specific phosphoproteomic changes. This is in collaboration with [Emek Demir at OHSU](https://www.ohsu.edu/people/emek-demir), [Sara Gosline at PNNL](https://saragosline.wordpress.com), and [Fabian Fröhlich at Harvard](https://scholar.harvard.edu/fabianfroehlich/home). +The lab has been awarded a pilot grant from the NCI to combine mechanistic models and AI in the form of autoencoders to model patient-specific phosphoproteomic changes. This is in collaboration with [Emek Demir at OHSU](https://www.ohsu.edu/people/emek-demir-phd), [Sara Gosline at PNNL](https://saragosline.wordpress.com), and [Fabian Fröhlich at Harvard](https://scholar.harvard.edu/fabianfroehlich/home). diff --git a/_posts/news/2023-01-31-Andrew-EDI-award.md b/_posts/news/2023-01-31-Andrew-EDI-award.md index e0a30406..49be1719 100644 --- a/_posts/news/2023-01-31-Andrew-EDI-award.md +++ b/_posts/news/2023-01-31-Andrew-EDI-award.md @@ -4,4 +4,4 @@ title: Andrew EDI Leadership Award date: 2023-01-31 12:00:00 categories: news --- -Congratulations to Andrew for [winning a UCLA EDI Student Leadership Award](https://equity.ucla.edu/ucla-edi-student-leadership-award/overview-and-application/)! This is a campus-wide award recognizing UCLA students who have exhibited exceptional leadership aligning with and contributing to UCLA's EDI mission and priorities. +Congratulations to Andrew for winning a UCLA EDI Student Leadership Award! This is a campus-wide award recognizing UCLA students who have exhibited exceptional leadership aligning with and contributing to UCLA's EDI mission and priorities. diff --git a/team/index.md b/team/index.md index f8d54363..ab875fa1 100755 --- a/team/index.md +++ b/team/index.md @@ -10,7 +10,7 @@ title: Team Ph. D., Biological Engineering, MIT B.S., Bioengineering, University of California, Los Angeles -Aaron is an Associate Professor of [Bioengineering](https://www.bioeng.ucla.edu) and a member of the [Bioinformatics IDP](https://bioinformatics.ucla.edu), [Jonsson Comprehensive Cancer Center](https://cancer.ucla.edu), [Broad Stem Cell Research Center](https://stemcell.ucla.edu), and [Institute for Quantitative and Computational Biosciences](https://qcb.ucla.edu). He strives to learn how we can use computational models to control biological systems and treat disease. Outside of the lab, he can be found consuming anything that might be considered science fiction, reading about the philosophy/history of science, or cycling in the Santa Monica mountains. +Aaron is an Associate Professor of [Bioengineering](https://www.bioeng.ucla.edu) and a member of the [Bioinformatics IDP](https://bioinformatics.ucla.edu), [Jonsson Comprehensive Cancer Center](https://www.uclahealth.org/cancer), [Broad Stem Cell Research Center](https://stemcell.ucla.edu), and [Institute for Quantitative and Computational Biosciences](https://qcb.ucla.edu). He strives to learn how we can use computational models to control biological systems and treat disease. Outside of the lab, he can be found consuming anything that might be considered science fiction, reading about the philosophy/history of science, or cycling in the Santa Monica mountains.