From f67f15bfa7126f04d2d949c2b9b4e309c2b930ef Mon Sep 17 00:00:00 2001 From: Aaron Meyer Date: Mon, 24 Nov 2025 08:17:02 -0800 Subject: [PATCH 1/6] Get lychee working again --- .github/workflows/build.yml | 11 +++++------ 1 file changed, 5 insertions(+), 6 deletions(-) diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml index 4f30dcb9..aee217c7 100644 --- a/.github/workflows/build.yml +++ b/.github/workflows/build.yml @@ -1,7 +1,6 @@ name: Build website -on: - push +on: push # Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages permissions: @@ -13,12 +12,12 @@ jobs: jekyll: runs-on: ubuntu-24.04 steps: - - uses: actions/checkout@v4 + - uses: actions/checkout@v6 - name: Install ruby uses: ruby/setup-ruby@v1 with: - ruby-version: '3.4' + ruby-version: "3.4" bundler-cache: true # runs 'bundle install' and caches installed gems automatically - name: Install Typst @@ -40,12 +39,12 @@ jobs: uses: lycheeverse/lychee-action@v2 with: fail: false - args: "--base _site --accept '100..=103,200..=299,403' --cache --max-cache-age 14d _site" + args: --root-dir "$(pwd)/_site" --verbose --accept '100..=103,200..=299,403' --cache --max-cache-age 14d _site - name: Upload artifact uses: actions/upload-pages-artifact@v3 with: - path: '_site' + path: "_site" - name: Deploy to GitHub Pages if: github.ref == 'refs/heads/main' id: deployment From 3252ce57047d9d8896ec2c58f508f36dad6f04bf Mon Sep 17 00:00:00 2001 From: Aaron Meyer Date: Mon, 24 Nov 2025 08:46:49 -0800 Subject: [PATCH 2/6] Fix a link --- .github/workflows/build.yml | 2 +- _posts/news/2023-01-31-Andrew-EDI-award.md | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml index aee217c7..b56f4136 100644 --- a/.github/workflows/build.yml +++ b/.github/workflows/build.yml @@ -39,7 +39,7 @@ jobs: uses: lycheeverse/lychee-action@v2 with: fail: false - args: --root-dir "$(pwd)/_site" --verbose --accept '100..=103,200..=299,403' --cache --max-cache-age 14d _site + args: --root-dir "$(pwd)/_site" --accept '100..=103,200..=299,403' --cache --max-cache-age 14d _site - name: Upload artifact uses: actions/upload-pages-artifact@v3 diff --git a/_posts/news/2023-01-31-Andrew-EDI-award.md b/_posts/news/2023-01-31-Andrew-EDI-award.md index e0a30406..49be1719 100644 --- a/_posts/news/2023-01-31-Andrew-EDI-award.md +++ b/_posts/news/2023-01-31-Andrew-EDI-award.md @@ -4,4 +4,4 @@ title: Andrew EDI Leadership Award date: 2023-01-31 12:00:00 categories: news --- -Congratulations to Andrew for [winning a UCLA EDI Student Leadership Award](https://equity.ucla.edu/ucla-edi-student-leadership-award/overview-and-application/)! This is a campus-wide award recognizing UCLA students who have exhibited exceptional leadership aligning with and contributing to UCLA's EDI mission and priorities. +Congratulations to Andrew for winning a UCLA EDI Student Leadership Award! This is a campus-wide award recognizing UCLA students who have exhibited exceptional leadership aligning with and contributing to UCLA's EDI mission and priorities. From f8ff4b7e5312015c89fb23746e5bc9bb79d6b169 Mon Sep 17 00:00:00 2001 From: Aaron Meyer Date: Mon, 24 Nov 2025 09:18:38 -0800 Subject: [PATCH 3/6] Fix some other links --- _bibliography/pubs.bib | 2 +- _posts/news/2019-05-15-CSBC-west-coast.md | 2 +- _posts/news/2020-08-16-autoencoder-pilot.md | 2 +- team/index.md | 2 +- 4 files changed, 4 insertions(+), 4 deletions(-) diff --git a/_bibliography/pubs.bib b/_bibliography/pubs.bib index e36e6190..86cc48ed 100644 --- a/_bibliography/pubs.bib +++ b/_bibliography/pubs.bib @@ -1369,7 +1369,7 @@ @Article{ Tan2024 decomposition}, keywords = {tensors, reviews, computational-example, highlight}, month = {August}, - preprint = {http://arxiv.org/abs/2402.16638}, + preprint = {https://arxiv.org/abs/2402.16638}, url = {https://www.sciencedirect.com/science/article/abs/pii/S2405471224002035}, doi = {10.1016/j.cels.2024.07.004}, pages = {679--693}, diff --git a/_posts/news/2019-05-15-CSBC-west-coast.md b/_posts/news/2019-05-15-CSBC-west-coast.md index e1d71660..c4063f33 100644 --- a/_posts/news/2019-05-15-CSBC-west-coast.md +++ b/_posts/news/2019-05-15-CSBC-west-coast.md @@ -4,4 +4,4 @@ title: CSBC West Coast Talk date: 2019-05-15 00:00:01 categories: news --- -Drs. Meyer and Bae will present at the [CSBC's Inaugural West Coast Symposium](https://csbconsortium.org/event/inaugural-cancer-systems-biology-consortium-west-coast-symposium/). +Drs. Meyer and Bae will present at the CSBC's Inaugural West Coast Symposium. diff --git a/_posts/news/2020-08-16-autoencoder-pilot.md b/_posts/news/2020-08-16-autoencoder-pilot.md index abba6fe5..0d94ac60 100644 --- a/_posts/news/2020-08-16-autoencoder-pilot.md +++ b/_posts/news/2020-08-16-autoencoder-pilot.md @@ -4,4 +4,4 @@ title: New funding date: 2020-08-16 12:00:00 categories: news --- -The lab has been awarded a pilot grant from the NCI to combine mechanistic models and AI in the form of autoencoders to model patient-specific phosphoproteomic changes. This is in collaboration with [Emek Demir at OHSU](https://www.ohsu.edu/people/emek-demir), [Sara Gosline at PNNL](https://saragosline.wordpress.com), and [Fabian Fröhlich at Harvard](https://scholar.harvard.edu/fabianfroehlich/home). +The lab has been awarded a pilot grant from the NCI to combine mechanistic models and AI in the form of autoencoders to model patient-specific phosphoproteomic changes. This is in collaboration with [Emek Demir at OHSU](https://www.ohsu.edu/people/emek-demir-phd), [Sara Gosline at PNNL](https://saragosline.wordpress.com), and [Fabian Fröhlich at Harvard](https://scholar.harvard.edu/fabianfroehlich/home). diff --git a/team/index.md b/team/index.md index f8d54363..ab875fa1 100755 --- a/team/index.md +++ b/team/index.md @@ -10,7 +10,7 @@ title: Team Ph. D., Biological Engineering, MIT B.S., Bioengineering, University of California, Los Angeles -Aaron is an Associate Professor of [Bioengineering](https://www.bioeng.ucla.edu) and a member of the [Bioinformatics IDP](https://bioinformatics.ucla.edu), [Jonsson Comprehensive Cancer Center](https://cancer.ucla.edu), [Broad Stem Cell Research Center](https://stemcell.ucla.edu), and [Institute for Quantitative and Computational Biosciences](https://qcb.ucla.edu). He strives to learn how we can use computational models to control biological systems and treat disease. Outside of the lab, he can be found consuming anything that might be considered science fiction, reading about the philosophy/history of science, or cycling in the Santa Monica mountains. +Aaron is an Associate Professor of [Bioengineering](https://www.bioeng.ucla.edu) and a member of the [Bioinformatics IDP](https://bioinformatics.ucla.edu), [Jonsson Comprehensive Cancer Center](https://www.uclahealth.org/cancer), [Broad Stem Cell Research Center](https://stemcell.ucla.edu), and [Institute for Quantitative and Computational Biosciences](https://qcb.ucla.edu). He strives to learn how we can use computational models to control biological systems and treat disease. Outside of the lab, he can be found consuming anything that might be considered science fiction, reading about the philosophy/history of science, or cycling in the Santa Monica mountains.
From 78e1c012fedfe9484f00f244ccec2110c1636e7a Mon Sep 17 00:00:00 2001 From: Aaron Meyer Date: Mon, 24 Nov 2025 09:39:59 -0800 Subject: [PATCH 4/6] Add HUB grants --- _data/service.yaml | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/_data/service.yaml b/_data/service.yaml index b9c869ab..5facbb11 100644 --- a/_data/service.yaml +++ b/_data/service.yaml @@ -208,6 +208,10 @@ service: organization: UCLA Engineering Alumni Reunion date: "2018" profession: + - role: Reviewer + organization: HUB Innovation Grants Program + date: "2025" + - role: Judge organization: Vivli AMR Data Challenge date: "2025" @@ -462,4 +466,4 @@ service: - role: Ad Hoc Reviewer organization: J. Cell Biol. - date: 2011–2012 \ No newline at end of file + date: 2011–2012 From b5d54f8e92c7d5116fdf58b8dcbf6d43223289f4 Mon Sep 17 00:00:00 2001 From: Aaron Meyer Date: Mon, 24 Nov 2025 09:47:18 -0800 Subject: [PATCH 5/6] Add SIT meeting --- _data/service.yaml | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/_data/service.yaml b/_data/service.yaml index 5facbb11..d0efb1f4 100644 --- a/_data/service.yaml +++ b/_data/service.yaml @@ -208,6 +208,10 @@ service: organization: UCLA Engineering Alumni Reunion date: "2018" profession: + - role: Organizer + organization: Systems Immunology in Transplantation + date: "2024–2025" + - role: Reviewer organization: HUB Innovation Grants Program date: "2025" From 5ed2807d6e00bd436018617395685a9d39c2a0be Mon Sep 17 00:00:00 2001 From: Aaron Meyer Date: Mon, 24 Nov 2025 09:51:04 -0800 Subject: [PATCH 6/6] Add Dexter committee --- _data/thesis-committees.yaml | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/_data/thesis-committees.yaml b/_data/thesis-committees.yaml index c21a5202..f8a207cb 100644 --- a/_data/thesis-committees.yaml +++ b/_data/thesis-committees.yaml @@ -214,3 +214,9 @@ committees: advisor: Song Li start_date: 2025 end_date: Present + + - name: Dexter Lai + program: Bioengineering (Ph.D.) + advisor: Song Li + start_date: 2025 + end_date: Present