Failed to start the Kernel #10949
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Muyi2
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Failed to start the Kernel
#10949
Replies: 1 comment 1 reply
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With conda failing to activate, it looks similar to this issue: microsoft/vscode-python#19417 |
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1 reply
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this wiki could also be helpful to resolve your issue https://github.com/microsoft/vscode-jupyter/wiki/Failure-to-start-kernel-when-using-Conda-Environments |
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I can't use jupyter in ubuntu.[Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458r8FgaGD2LqM4.json']
`Visual Studio Code (1.69.2, undefined, desktop)
Jupyter Extension Version: 2022.7.1001951036.
Python Extension Version: 2022.10.1.
Workspace folder /home/ycg/code
info 14:53:42.807: ZMQ install verified.
User belongs to experiment group 'jupyterTestcf'
User belongs to experiment group 'jupyterEnhancedDataViewer'
info 14:53:43.149: LSP Notebooks experiment is enabled
info 14:53:43.328: Starting Jupyter Session id = 'startUsingPythonInterpreter:.jvsc74a57bd0f4f46c0049ab54d43fec2de5dc4e01a5fdc99d9d14d17f1bb906ac9c40e561ab./home/ycg/anaconda3/envs/job/python./home/ycg/anaconda3/envs/job/python.-m#ipykernel_launcher' (Python Path: /home/ycg/anaconda3/envs/job, EnvType: Conda, EnvName: 'job', Version: 3.8.2) for '/home/ycg/code/text.ipynb' (disableUI=true)
info 14:53:43.328: Creating raw notebook for resource '/home/ycg/code/text.ipynb'
info 14:53:43.328: Computing working directory for resource '/home/ycg/code/text.ipynb'
info 14:53:43.380: Starting Jupyter Session id = 'startUsingPythonInterpreter:.jvsc74a57bd0ffd98003224a5cbb2067fcca58ee33b230044e1ca65670e1d404461254196810./home/ycg/anaconda3/python./home/ycg/anaconda3/python.-m#ipykernel_launcher' (Python Path: /home/ycg/anaconda3, EnvType: Conda, EnvName: 'base', Version: 3.9.7) for '/home/ycg/code/connect.ipynb' (disableUI=true)
info 14:53:43.381: Creating raw notebook for resource '/home/ycg/code/connect.ipynb'
info 14:53:43.381: Computing working directory for resource '/home/ycg/code/connect.ipynb'
info 14:53:43.407: Starting raw kernel 'job (Python 3.8.2)' for interpreter /home/ycg/anaconda3/envs/job/bin/python
info 14:53:43.410: Kernel launching with ports 9000,9001,9002,9003,9004. Start port is 9000
info 14:53:43.411: Starting raw kernel 'base (Python 3.9.7)' for interpreter /home/ycg/anaconda3/bin/python
info 14:53:43.414: Kernel launching with ports 9008,9009,9010,9011,9012. Start port is 9000
error 14:53:43.418: Failed to connect raw kernel session: Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458jn22rQS4qbUC.json'
warn 14:53:43.419: Error occurred while trying to start the kernel, options.disableUI=true [r [Error]:
at new r (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:17:27938)
at Function.from (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:17:28016)
at m.createJupyterSession (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:2:2273774)
at async m.start (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:2:2266672)
at async Function.wrapKernelMethodImpl (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:2:2457988)
Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458jn22rQS4qbUC.json'] {
category: 'unknown',
originalException: [Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458jn22rQS4qbUC.json'] {
errno: -2,
code: 'ENOENT',
syscall: 'open',
path: '/tmpstore/kernel-v2-6458jn22rQS4qbUC.json'
}
}
error 14:53:43.422: Failed to connect raw kernel session: Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458TM5tInIh7KRk.json'
warn 14:53:43.424: Error occurred while trying to start the kernel, options.disableUI=true [r [Error]:
at new r (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:17:27938)
at Function.from (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:17:28016)
at m.createJupyterSession (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:2:2273774)
at async m.start (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:2:2266672)
at async Function.wrapKernelMethodImpl (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:2:2457988)
Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458TM5tInIh7KRk.json'] {
category: 'unknown',
originalException: [Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458TM5tInIh7KRk.json'] {
errno: -2,
code: 'ENOENT',
syscall: 'open',
path: '/tmpstore/kernel-v2-6458TM5tInIh7KRk.json'
}
}
info 14:53:43.492: Experiment status for python is {"enabled":true,"optInto":[],"optOutFrom":[]}
info 14:53:43.525: Preferred Remote kernel for /home/ycg/code/text.ipynb is undefined
info 14:53:43.525: Find preferred kernel for /home/ycg/code/text.ipynb with metadata {"kernelspec":{"display_name":"Python 3.8.2 ('job')","language":"python","name":"python3"},"language_info":{"name":"python","version":"3.8.2"},"orig_nbformat":4,"vscode":{"interpreter":{"hash":"f4f46c0049ab54d43fec2de5dc4e01a5fdc99d9d14d17f1bb906ac9c40e561ab"}}} & preferred interpreter /home/ycg/anaconda3/envs/job/bin/python
info 14:53:43.526: Preferred Remote kernel for /home/ycg/code/text.ipynb is undefined
info 14:53:43.526: Preferred kernel .jvsc74a57bd0f4f46c0049ab54d43fec2de5dc4e01a5fdc99d9d14d17f1bb906ac9c40e561ab./home/ycg/anaconda3/envs/job/python./home/ycg/anaconda3/envs/job/python.-m#ipykernel_launcher is exact match
info 14:53:43.527: PreferredConnection: .jvsc74a57bd0f4f46c0049ab54d43fec2de5dc4e01a5fdc99d9d14d17f1bb906ac9c40e561ab./home/ycg/anaconda3/envs/job/python./home/ycg/anaconda3/envs/job/python.-m#ipykernel_launcher found for NotebookDocument: /home/ycg/code/text.ipynb
info 14:53:43.528: Preferred Remote kernel for /home/ycg/code/connect.ipynb is undefined
info 14:53:43.528: Find preferred kernel for /home/ycg/code/connect.ipynb with metadata {"kernelspec":{"display_name":"Python 3.9.7 ('base')","language":"python","name":"python3"},"language_info":{"codemirror_mode":{"name":"ipython","version":3},"file_extension":".py","mimetype":"text/x-python","name":"python","nbconvert_exporter":"python","pygments_lexer":"ipython3","version":"3.9.7"},"orig_nbformat":4,"vscode":{"interpreter":{"hash":"ffd98003224a5cbb2067fcca58ee33b230044e1ca65670e1d404461254196810"}}} & preferred interpreter /home/ycg/anaconda3/envs/job/bin/python
info 14:53:43.530: Preferred Remote kernel for /home/ycg/code/connect.ipynb is undefined
info 14:53:43.530: Preferred kernel .jvsc74a57bd0ffd98003224a5cbb2067fcca58ee33b230044e1ca65670e1d404461254196810./home/ycg/anaconda3/python./home/ycg/anaconda3/python.-m#ipykernel_launcher is exact match
info 14:53:43.531: PreferredConnection: .jvsc74a57bd0ffd98003224a5cbb2067fcca58ee33b230044e1ca65670e1d404461254196810./home/ycg/anaconda3/python./home/ycg/anaconda3/python.-m#ipykernel_launcher found for NotebookDocument: /home/ycg/code/connect.ipynb
error 14:53:43.695: Failed to get activated environment variables ourselves [Error: Command failed: conda activate job && echo 'e8b39361-0157-4923-80e1-22d70d46dee6' && python /home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/pythonFiles/printEnvVariables.py
CommandNotFoundError: Your shell has not been properly configured to use 'conda activate'.
To initialize your shell, run
Currently supported shells are:
See 'conda init --help' for more information and options.
IMPORTANT: You may need to close and restart your shell after running 'conda init'.
killed: false,
code: 1,
signal: null,
cmd: "conda activate job && echo 'e8b39361-0157-4923-80e1-22d70d46dee6' && python /home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/pythonFiles/printEnvVariables.py"
}
error 14:53:43.695: Execing shell command, Class name = h, completed in 196ms, has a falsy return value, Arg 1: "~/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/pythonFiles/printEnvVariables.py", Arg 2: {"env":{"ELECTRON_RUN_AS_NODE":"1","GJS_DEBUG_TOPICS":"JS ERROR;JS LOG","LANGUAGE":"zh_CN:en","LC_TIME":"zh_CN.UTF-8","USER":"ycg","SSH_AGENT_PID":"1763","XDG_SESSION_TYPE":"x11","SHLVL":"0","HOME":"/home/ycg","DESKTOP_SESSION":"ubuntu","GIO_LAUNCHED_DESKTOP_FILE":"/usr/share/applications/code.desktop","GTK_MODULES":"gail:atk-bridge","GNOME_SHELL_SESSION_MODE":"ubuntu","LC_MONETARY":"zh_CN.UTF-8","MANAGERPID":"1593","DBUS_SESSION_BUS_ADDRESS":"unix:path=/run/user/1000/bus","GIO_LAUNCHED_DESKTOP_FILE_PID":"2779","IM_CONFIG_PHASE":"1","LOGNAME":"ycg","_":"/usr/share/code/code","JOURNAL_STREAM":"8:40316","XDG_SESSION_CLASS":"user","USERNAME":"ycg","GNOME_DESKTOP_SESSION_ID":"this-is-deprecated","WINDOWPATH":"2","PATH":"/usr/local/workbench_1.5.0/bin_rh_linux64:/usr/local/freesurfer_6.0.1/bin:/usr/local/freesurfer_6.0.1/fsfast/bin:/usr/local/freesurfer_6.0.1/tktools:/usr/local/fsl_5.0.9/bin:/usr/local/freesurfer_6.0.1/mni/bin:/usr/local/fsl_5.0.9/bin:/usr/local/MATLAB/R2018b/bin:/home/ycg/gyh/CBIG/bin:/home/ycg/anaconda3/bin:/home/ycg/anaconda3/condabin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin","PAPERSIZE":"a4","SESSION_MANAGER":"local/ycg:@/tmp/.ICE-unix/1854,unix/ycg:/tmp/.ICE-unix/1854","INVOCATION_ID":"ea82aac0140247cbaf65acc9142feef0","LC_ADDRESS":"zh_CN.UTF-8","XDG_RUNTIME_DIR":"/run/user/1000","XDG_MENU_PREFIX":"gnome-","DISPLAY":":1","LANG":"zh_CN.UTF-8","LC_TELEPHONE":"zh_CN.UTF-8","XDG_CURRENT_DESKTOP":"Unity","XAUTHORITY":"/run/user/1000/gdm/Xauthority","XDG_SESSION_DESKTOP":"ubuntu","XMODIFIERS":"@im=ibus","SSH_AUTH_SOCK":"/run/user/1000/keyring/ssh","LC_NAME":"zh_CN.UTF-8","SHELL":"/bin/bash","QT_ACCESSIBILITY":"1","GDMSESSION":"ubuntu","LC_MEASUREMENT":"zh_CN.UTF-8","LC_IDENTIFICATION":"zh_CN.UTF-8","GPG_AGENT_INFO":"/run/user/1000/gnupg/S.gpg-agent:0:1","GJS_DEBUG_OUTPUT":"stderr","QT_IM_MODULE":"ibus","PWD":"/home/ycg","XDG_DATA_DIRS":"/usr/share/ubuntu:/usr/local/share/:/usr/share/:/var/lib/snapd/desktop","XDG_CONFIG_DIRS":"/etc/xdg/xdg-ubuntu:/etc/xdg","LC_NUMERIC":"zh_CN.UTF-8","LC_PAPER":"zh_CN.UTF-8","CHROME_DESKTOP":"code-url-handler.desktop","ORIGINAL_XDG_CURRENT_DESKTOP":"ubuntu:GNOME","VSCODE_CWD":"/home/ycg","GDK_BACKEND":"x11","VSCODE_NLS_CONFIG":"{"locale":"zh-cn","availableLanguages":{"*":"zh-cn"},"_languagePackId":"1d735750dbb1b9066c7513078396ba0f.zh-cn","_translationsConfigFile":"/home/ycg/.config/Code/clp/1d735750dbb1b9066c7513078396ba0f.zh-cn/tcf.json","_cacheRoot":"/home/ycg/.config/Code/clp/1d735750dbb1b9066c7513078396ba0f.zh-cn","_resolvedLanguagePackCoreLocation":"/home/ycg/.config/Code/clp/1d735750dbb1b9066c7513078396ba0f.zh-cn/3b889b090b5ad5793f524b5d1d39fda662b96a2a","_corruptedFile":"/home/ycg/.config/Code/clp/1d735750dbb1b9066c7513078396ba0f.zh-cn/corrupted.info","_languagePackSupport":true}","VSCODE_CODE_CACHE_PATH":"/home/ycg/.config/Code/CachedData/3b889b090b5ad5793f524b5d1d39fda662b96a2a","VSCODE_IPC_HOOK":"/run/user/1000/vscode-541f5ab9-1.69.2-main.sock","VSCODE_PID":"2779","FSL_DIR":"/usr/local/fsl_5.0.9","CONDA_EXE":"/home/ycg/anaconda3/bin/conda","_CE_M":"","CBIG_AFNI_DIR":"","OS":"Linux","FSLWISH":"/usr/local/fsl_5.0.9/bin/fslwish","MINC_BIN_DIR":"/usr/local/freesurfer_6.0.1/mni/bin","CBIG_CARET_DIR":"","FSFAST_HOME":"/usr/local/freesurfer_6.0.1/fsfast","MATLABPATH":"/home/ycg/gyh/CBIG/setup","CBIG_SD_DIR":"/home/ycg/gyh/CBIG/external_packages/SD/SDv1.5.1-svn593","MNI_DATAPATH":"/usr/local/freesurfer_6.0.1/mni/data","FS_OVERRIDE":"0","CONDA_PREFIX":"/home/ycg/anaconda3","CBIG_CODE_DIR":"/home/ycg/gyh/CBIG","CBIG_MATLAB_DIR":"/usr/local/MATLAB/R2018b","CBIG_FSLDIR":"/usr/local/fsl_5.0.9","FUNCTIONALS_DIR":"/usr/local/freesurfer_6.0.1/sessions","CBIG_ANTS_DIR":"","MINC_LIB_DIR":"/usr/local/freesurfer_6.0.1/mni/lib","LS_COLORS":"","CBIG_SPM_DIR":"","FSLLOCKDIR":"","FMRI_ANALYSIS_DIR":"/usr/local/freesurfer_6.0.1/fsfast","CONDA_PROMPT_MODIFIER":"(base) ","TMPDIR":"/tmpstore","MNI_DIR":"/usr/local/freesurfer_6.0.1/mni","PERL5LIB":"/usr/local/freesurfer_6.0.1/mni/share/perl5","FSLDIR":"/usr/local/fsl_5.0.9","MNI_PERL5LIB":"/usr/local/freesurfer_6.0.1/mni/share/perl5","FREESURFER_HOME":"/usr/local/freesurfer_6.0.1","LESSCLOSE":"/usr/bin/lesspipe [Error: Command failed: conda activate job && echo 'e8b39361-0157-4923-80e1-22d70d46dee6' && python /home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/pythonFiles/printEnvVariables.py
CommandNotFoundError: Your shell has not been properly configured to use 'conda activate'.
To initialize your shell, run
Currently supported shells are:
See 'conda init --help' for more information and options.
IMPORTANT: You may need to close and restart your shell after running 'conda init'.
killed: false,
code: 1,
signal: null,
cmd: "conda activate job && echo 'e8b39361-0157-4923-80e1-22d70d46dee6' && python /home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/pythonFiles/printEnvVariables.py"
} %s","LOCAL_DIR":"/usr/local/freesurfer_6.0.1/local","_CE_CONDA":"","FIX_VERTEX_AREA":"","LESSOPEN":"| /usr/bin/lesspipe %s","FSLTCLSH":"/usr/local/fsl_5.0.9/bin/fsltclsh","CONDA_SHLVL":"1","SUBJECTS_DIR":"/usr/local/freesurfer_6.0.1/subjects","FSLMULTIFILEQUIT":"TRUE","CBIG_WB_DIR":"/usr/local/workbench_1.5.0","CBIG_BIN_DIR":"/home/ycg/gyh/CBIG/bin","CONDA_PYTHON_EXE":"/home/ycg/anaconda3/bin/python","FSLREMOTECALL":"","CONDA_DEFAULT_ENV":"base","FSLMACHINELIST":"","FSLGECUDAQ":"cuda.q","FSF_OUTPUT_FORMAT":"nii.gz","FSL_BIN":"/usr/local/fsl_5.0.9/bin","FSLOUTPUTTYPE":"NIFTI_GZ","VSCODE_AMD_ENTRYPOINT":"vs/workbench/api/node/extensionHostProcess","VSCODE_HANDLES_UNCAUGHT_ERRORS":"true","APPLICATION_INSIGHTS_NO_DIAGNOSTIC_CHANNEL":"1","PYTHONWARNINGS":"ignore"},"shell":"bash","timeout":60000,"maxBuffer":1000000,"throwOnStdErr":false}
error 14:53:43.706: Failed to get activated environment variables ourselves [Error: Command failed: conda activate base && echo 'e8b39361-0157-4923-80e1-22d70d46dee6' && python /home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/pythonFiles/printEnvVariables.py
CommandNotFoundError: Your shell has not been properly configured to use 'conda activate'.
To initialize your shell, run
Currently supported shells are:
See 'conda init --help' for more information and options.
IMPORTANT: You may need to close and restart your shell after running 'conda init'.
killed: false,
code: 1,
signal: null,
cmd: "conda activate base && echo 'e8b39361-0157-4923-80e1-22d70d46dee6' && python /home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/pythonFiles/printEnvVariables.py"
}
error 14:53:43.706: Execing shell command, Class name = h, completed in 200ms, has a falsy return value, Arg 1: "~/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/pythonFiles/printEnvVariables.py", Arg 2: {"env":{"ELECTRON_RUN_AS_NODE":"1","GJS_DEBUG_TOPICS":"JS ERROR;JS LOG","LANGUAGE":"zh_CN:en","LC_TIME":"zh_CN.UTF-8","USER":"ycg","SSH_AGENT_PID":"1763","XDG_SESSION_TYPE":"x11","SHLVL":"0","HOME":"/home/ycg","DESKTOP_SESSION":"ubuntu","GIO_LAUNCHED_DESKTOP_FILE":"/usr/share/applications/code.desktop","GTK_MODULES":"gail:atk-bridge","GNOME_SHELL_SESSION_MODE":"ubuntu","LC_MONETARY":"zh_CN.UTF-8","MANAGERPID":"1593","DBUS_SESSION_BUS_ADDRESS":"unix:path=/run/user/1000/bus","GIO_LAUNCHED_DESKTOP_FILE_PID":"2779","IM_CONFIG_PHASE":"1","LOGNAME":"ycg","_":"/usr/share/code/code","JOURNAL_STREAM":"8:40316","XDG_SESSION_CLASS":"user","USERNAME":"ycg","GNOME_DESKTOP_SESSION_ID":"this-is-deprecated","WINDOWPATH":"2","PATH":"/usr/local/workbench_1.5.0/bin_rh_linux64:/usr/local/freesurfer_6.0.1/bin:/usr/local/freesurfer_6.0.1/fsfast/bin:/usr/local/freesurfer_6.0.1/tktools:/usr/local/fsl_5.0.9/bin:/usr/local/freesurfer_6.0.1/mni/bin:/usr/local/fsl_5.0.9/bin:/usr/local/MATLAB/R2018b/bin:/home/ycg/gyh/CBIG/bin:/home/ycg/anaconda3/bin:/home/ycg/anaconda3/condabin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin","PAPERSIZE":"a4","SESSION_MANAGER":"local/ycg:@/tmp/.ICE-unix/1854,unix/ycg:/tmp/.ICE-unix/1854","INVOCATION_ID":"ea82aac0140247cbaf65acc9142feef0","LC_ADDRESS":"zh_CN.UTF-8","XDG_RUNTIME_DIR":"/run/user/1000","XDG_MENU_PREFIX":"gnome-","DISPLAY":":1","LANG":"zh_CN.UTF-8","LC_TELEPHONE":"zh_CN.UTF-8","XDG_CURRENT_DESKTOP":"Unity","XAUTHORITY":"/run/user/1000/gdm/Xauthority","XDG_SESSION_DESKTOP":"ubuntu","XMODIFIERS":"@im=ibus","SSH_AUTH_SOCK":"/run/user/1000/keyring/ssh","LC_NAME":"zh_CN.UTF-8","SHELL":"/bin/bash","QT_ACCESSIBILITY":"1","GDMSESSION":"ubuntu","LC_MEASUREMENT":"zh_CN.UTF-8","LC_IDENTIFICATION":"zh_CN.UTF-8","GPG_AGENT_INFO":"/run/user/1000/gnupg/S.gpg-agent:0:1","GJS_DEBUG_OUTPUT":"stderr","QT_IM_MODULE":"ibus","PWD":"/home/ycg","XDG_DATA_DIRS":"/usr/share/ubuntu:/usr/local/share/:/usr/share/:/var/lib/snapd/desktop","XDG_CONFIG_DIRS":"/etc/xdg/xdg-ubuntu:/etc/xdg","LC_NUMERIC":"zh_CN.UTF-8","LC_PAPER":"zh_CN.UTF-8","CHROME_DESKTOP":"code-url-handler.desktop","ORIGINAL_XDG_CURRENT_DESKTOP":"ubuntu:GNOME","VSCODE_CWD":"/home/ycg","GDK_BACKEND":"x11","VSCODE_NLS_CONFIG":"{"locale":"zh-cn","availableLanguages":{"*":"zh-cn"},"_languagePackId":"1d735750dbb1b9066c7513078396ba0f.zh-cn","_translationsConfigFile":"/home/ycg/.config/Code/clp/1d735750dbb1b9066c7513078396ba0f.zh-cn/tcf.json","_cacheRoot":"/home/ycg/.config/Code/clp/1d735750dbb1b9066c7513078396ba0f.zh-cn","_resolvedLanguagePackCoreLocation":"/home/ycg/.config/Code/clp/1d735750dbb1b9066c7513078396ba0f.zh-cn/3b889b090b5ad5793f524b5d1d39fda662b96a2a","_corruptedFile":"/home/ycg/.config/Code/clp/1d735750dbb1b9066c7513078396ba0f.zh-cn/corrupted.info","_languagePackSupport":true}","VSCODE_CODE_CACHE_PATH":"/home/ycg/.config/Code/CachedData/3b889b090b5ad5793f524b5d1d39fda662b96a2a","VSCODE_IPC_HOOK":"/run/user/1000/vscode-541f5ab9-1.69.2-main.sock","VSCODE_PID":"2779","FSL_DIR":"/usr/local/fsl_5.0.9","CONDA_EXE":"/home/ycg/anaconda3/bin/conda","_CE_M":"","CBIG_AFNI_DIR":"","OS":"Linux","FSLWISH":"/usr/local/fsl_5.0.9/bin/fslwish","MINC_BIN_DIR":"/usr/local/freesurfer_6.0.1/mni/bin","CBIG_CARET_DIR":"","FSFAST_HOME":"/usr/local/freesurfer_6.0.1/fsfast","MATLABPATH":"/home/ycg/gyh/CBIG/setup","CBIG_SD_DIR":"/home/ycg/gyh/CBIG/external_packages/SD/SDv1.5.1-svn593","MNI_DATAPATH":"/usr/local/freesurfer_6.0.1/mni/data","FS_OVERRIDE":"0","CONDA_PREFIX":"/home/ycg/anaconda3","CBIG_CODE_DIR":"/home/ycg/gyh/CBIG","CBIG_MATLAB_DIR":"/usr/local/MATLAB/R2018b","CBIG_FSLDIR":"/usr/local/fsl_5.0.9","FUNCTIONALS_DIR":"/usr/local/freesurfer_6.0.1/sessions","CBIG_ANTS_DIR":"","MINC_LIB_DIR":"/usr/local/freesurfer_6.0.1/mni/lib","LS_COLORS":"","CBIG_SPM_DIR":"","FSLLOCKDIR":"","FMRI_ANALYSIS_DIR":"/usr/local/freesurfer_6.0.1/fsfast","CONDA_PROMPT_MODIFIER":"(base) ","TMPDIR":"/tmpstore","MNI_DIR":"/usr/local/freesurfer_6.0.1/mni","PERL5LIB":"/usr/local/freesurfer_6.0.1/mni/share/perl5","FSLDIR":"/usr/local/fsl_5.0.9","MNI_PERL5LIB":"/usr/local/freesurfer_6.0.1/mni/share/perl5","FREESURFER_HOME":"/usr/local/freesurfer_6.0.1","LESSCLOSE":"/usr/bin/lesspipe [Error: Command failed: conda activate base && echo 'e8b39361-0157-4923-80e1-22d70d46dee6' && python /home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/pythonFiles/printEnvVariables.py
CommandNotFoundError: Your shell has not been properly configured to use 'conda activate'.
To initialize your shell, run
Currently supported shells are:
See 'conda init --help' for more information and options.
IMPORTANT: You may need to close and restart your shell after running 'conda init'.
killed: false,
code: 1,
signal: null,
cmd: "conda activate base && echo 'e8b39361-0157-4923-80e1-22d70d46dee6' && python /home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/pythonFiles/printEnvVariables.py"
} %s","LOCAL_DIR":"/usr/local/freesurfer_6.0.1/local","_CE_CONDA":"","FIX_VERTEX_AREA":"","LESSOPEN":"| /usr/bin/lesspipe %s","FSLTCLSH":"/usr/local/fsl_5.0.9/bin/fsltclsh","CONDA_SHLVL":"1","SUBJECTS_DIR":"/usr/local/freesurfer_6.0.1/subjects","FSLMULTIFILEQUIT":"TRUE","CBIG_WB_DIR":"/usr/local/workbench_1.5.0","CBIG_BIN_DIR":"/home/ycg/gyh/CBIG/bin","CONDA_PYTHON_EXE":"/home/ycg/anaconda3/bin/python","FSLREMOTECALL":"","CONDA_DEFAULT_ENV":"base","FSLMACHINELIST":"","FSLGECUDAQ":"cuda.q","FSF_OUTPUT_FORMAT":"nii.gz","FSL_BIN":"/usr/local/fsl_5.0.9/bin","FSLOUTPUTTYPE":"NIFTI_GZ","VSCODE_AMD_ENTRYPOINT":"vs/workbench/api/node/extensionHostProcess","VSCODE_HANDLES_UNCAUGHT_ERRORS":"true","APPLICATION_INSIGHTS_NO_DIAGNOSTIC_CHANNEL":"1","PYTHONWARNINGS":"ignore"},"shell":"bash","timeout":60000,"maxBuffer":1000000,"throwOnStdErr":false}
info 14:53:44.163: Preferred Remote kernel for /home/ycg/code/text.ipynb is undefined
info 14:53:44.163: Find preferred kernel for /home/ycg/code/text.ipynb with metadata {"kernelspec":{"display_name":"Python 3.8.2 ('job')","language":"python","name":"python3"},"language_info":{"name":"python","version":"3.8.2"},"orig_nbformat":4,"vscode":{"interpreter":{"hash":"f4f46c0049ab54d43fec2de5dc4e01a5fdc99d9d14d17f1bb906ac9c40e561ab"}}} & preferred interpreter /home/ycg/anaconda3/envs/job/bin/python
info 14:53:44.164: Preferred Remote kernel for /home/ycg/code/connect.ipynb is undefined
info 14:53:44.164: Find preferred kernel for /home/ycg/code/connect.ipynb with metadata {"kernelspec":{"display_name":"Python 3.9.7 ('base')","language":"python","name":"python3"},"language_info":{"codemirror_mode":{"name":"ipython","version":3},"file_extension":".py","mimetype":"text/x-python","name":"python","nbconvert_exporter":"python","pygments_lexer":"ipython3","version":"3.9.7"},"orig_nbformat":4,"vscode":{"interpreter":{"hash":"ffd98003224a5cbb2067fcca58ee33b230044e1ca65670e1d404461254196810"}}} & preferred interpreter /home/ycg/anaconda3/envs/job/bin/python
info 14:53:44.168: Preferred Remote kernel for /home/ycg/code/text.ipynb is undefined
info 14:53:44.168: Preferred kernel .jvsc74a57bd0f4f46c0049ab54d43fec2de5dc4e01a5fdc99d9d14d17f1bb906ac9c40e561ab./home/ycg/anaconda3/envs/job/python./home/ycg/anaconda3/envs/job/python.-m#ipykernel_launcher is exact match
info 14:53:44.169: Preferred Remote kernel for /home/ycg/code/connect.ipynb is undefined
info 14:53:44.169: Preferred kernel .jvsc74a57bd0ffd98003224a5cbb2067fcca58ee33b230044e1ca65670e1d404461254196810./home/ycg/anaconda3/python./home/ycg/anaconda3/python.-m#ipykernel_launcher is exact match
info 14:53:44.170: Preferred Remote kernel for /home/ycg/code/text.ipynb is undefined
info 14:53:44.170: Preferred Remote kernel for /home/ycg/code/connect.ipynb is undefined
info 14:53:44.613: Process Execution: > ~/anaconda3/envs/job/bin/python -c "import ipykernel; print(ipykernel.version); print("5dc3a68c-e34e-4080-9c3e-2a532b2ccb4d"); print(ipykernel.file)"
Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458lJIFXJGPjN2V.json'] {
category: 'unknown',
originalException: [Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458lJIFXJGPjN2V.json'] {
errno: -2,
code: 'ENOENT',
syscall: 'open',
path: '/tmpstore/kernel-v2-6458lJIFXJGPjN2V.json'
}
}
warn 14:53:52.688: Kernel Error, context = start [r [Error]:
at new r (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:17:27938)
at Function.from (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:17:28016)
at m.createJupyterSession (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:2:2273774)
at async m.start (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:2:2266672)
at async Function.wrapKernelMethodImpl (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:2:2457988)
Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458lJIFXJGPjN2V.json'] {
category: 'unknown',
originalException: [Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458lJIFXJGPjN2V.json'] {
errno: -2,
code: 'ENOENT',
syscall: 'open',
path: '/tmpstore/kernel-v2-6458lJIFXJGPjN2V.json'
}
}
info 14:53:52.693: Process Execution: > ~/anaconda3/envs/job/bin/python -c "import ipykernel"
Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458lJIFXJGPjN2V.json'] {
category: 'unknown',
originalException: [Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458lJIFXJGPjN2V.json'] {
errno: -2,
code: 'ENOENT',
syscall: 'open',
path: '/tmpstore/kernel-v2-6458lJIFXJGPjN2V.json'
}
}
error 14:53:52.803: Error in execution (get message for cell) [r [Error]:
at new r (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:17:27938)
at Function.from (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:17:28016)
at m.createJupyterSession (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:2:2273774)
at async m.start (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:2:2266672)
at async Function.wrapKernelMethodImpl (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:2:2457988)
Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458lJIFXJGPjN2V.json'] {
category: 'unknown',
originalException: [Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458lJIFXJGPjN2V.json'] {
errno: -2,
code: 'ENOENT',
syscall: 'open',
path: '/tmpstore/kernel-v2-6458lJIFXJGPjN2V.json'
}
}
error 14:54:1.703: Live Notebook not available for /home/ycg/code/text.ipynb
error 14:54:4.87: Live Notebook not available for /home/ycg/code/text.ipynb
error 14:54:4.225: Live Notebook not available for /home/ycg/code/text.ipynb
error 14:54:8.988: Live Notebook not available for /home/ycg/code/text.ipynb
error 14:54:12.795: Live Notebook not available for /home/ycg/code/text.ipynb
error 14:54:12.970: Live Notebook not available for /home/ycg/code/text.ipynb
error 14:54:14.38: Live Notebook not available for /home/ycg/code/text.ipynb
error 14:54:16.90: Live Notebook not available for /home/ycg/code/text.ipynb
info 14:54:17.843: Execute Cell 0 /home/ycg/code/text.ipynb
info 14:54:17.844: Starting Jupyter Session id = 'startUsingPythonInterpreter:.jvsc74a57bd0f4f46c0049ab54d43fec2de5dc4e01a5fdc99d9d14d17f1bb906ac9c40e561ab./home/ycg/anaconda3/envs/job/python./home/ycg/anaconda3/envs/job/python.-m#ipykernel_launcher' (Python Path: /home/ycg/anaconda3/envs/job, EnvType: Conda, EnvName: 'job', Version: 3.8.2) for '/home/ycg/code/text.ipynb' (disableUI=false)
info 14:54:17.844: Creating raw notebook for resource '/home/ycg/code/text.ipynb'
info 14:54:17.844: Computing working directory for resource '/home/ycg/code/text.ipynb'
info 14:54:17.847: Starting raw kernel 'job (Python 3.8.2)' for interpreter /home/ycg/anaconda3/envs/job/bin/python
info 14:54:17.852: Kernel launching with ports 9024,9025,9026,9027,9028. Start port is 9000
info 14:54:17.858: Process Execution: > ~/anaconda3/envs/job/bin/python -c "import ipykernel; print(ipykernel.version); print("5dc3a68c-e34e-4080-9c3e-2a532b2ccb4d"); print(ipykernel.file)"
Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458p8I1a2ppC5xf.json'] {
category: 'unknown',
originalException: [Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458p8I1a2ppC5xf.json'] {
errno: -2,
code: 'ENOENT',
syscall: 'open',
path: '/tmpstore/kernel-v2-6458p8I1a2ppC5xf.json'
}
}
warn 14:54:17.863: Kernel Error, context = start [r [Error]:
at new r (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:17:27938)
at Function.from (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:17:28016)
at m.createJupyterSession (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:2:2273774)
at async m.start (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:2:2266672)
at async Function.wrapKernelMethodImpl (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:2:2457988)
Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458p8I1a2ppC5xf.json'] {
category: 'unknown',
originalException: [Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458p8I1a2ppC5xf.json'] {
errno: -2,
code: 'ENOENT',
syscall: 'open',
path: '/tmpstore/kernel-v2-6458p8I1a2ppC5xf.json'
}
}
info 14:54:17.869: Process Execution: > ~/anaconda3/envs/job/bin/python -c "import ipykernel"
Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458p8I1a2ppC5xf.json'] {
category: 'unknown',
originalException: [Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458p8I1a2ppC5xf.json'] {
errno: -2,
code: 'ENOENT',
syscall: 'open',
path: '/tmpstore/kernel-v2-6458p8I1a2ppC5xf.json'
}
}
error 14:54:17.985: Error in execution (get message for cell) [r [Error]:
at new r (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:17:27938)
at Function.from (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:17:28016)
at m.createJupyterSession (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:2:2273774)
at async m.start (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:2:2266672)
at async Function.wrapKernelMethodImpl (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:2:2457988)
Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458p8I1a2ppC5xf.json'] {
category: 'unknown',
originalException: [Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458p8I1a2ppC5xf.json'] {
errno: -2,
code: 'ENOENT',
syscall: 'open',
path: '/tmpstore/kernel-v2-6458p8I1a2ppC5xf.json'
}
}
info 14:54:46.198: Execute Cell 0 /home/ycg/code/text.ipynb
info 14:54:46.198: Starting Jupyter Session id = 'startUsingPythonInterpreter:.jvsc74a57bd0f4f46c0049ab54d43fec2de5dc4e01a5fdc99d9d14d17f1bb906ac9c40e561ab./home/ycg/anaconda3/envs/job/python./home/ycg/anaconda3/envs/job/python.-m#ipykernel_launcher' (Python Path: /home/ycg/anaconda3/envs/job, EnvType: Conda, EnvName: 'job', Version: 3.8.2) for '/home/ycg/code/text.ipynb' (disableUI=false)
info 14:54:46.198: Creating raw notebook for resource '/home/ycg/code/text.ipynb'
info 14:54:46.198: Computing working directory for resource '/home/ycg/code/text.ipynb'
info 14:54:46.199: Starting raw kernel 'job (Python 3.8.2)' for interpreter /home/ycg/anaconda3/envs/job/bin/python
info 14:54:46.202: Kernel launching with ports 9032,9033,9034,9035,9036. Start port is 9000
info 14:54:46.207: Process Execution: > ~/anaconda3/envs/job/bin/python -c "import ipykernel; print(ipykernel.version); print("5dc3a68c-e34e-4080-9c3e-2a532b2ccb4d"); print(ipykernel.file)"
Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458MIrg0lx2yeWR.json'] {
category: 'unknown',
originalException: [Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458MIrg0lx2yeWR.json'] {
errno: -2,
code: 'ENOENT',
syscall: 'open',
path: '/tmpstore/kernel-v2-6458MIrg0lx2yeWR.json'
}
}
warn 14:54:46.212: Kernel Error, context = start [r [Error]:
at new r (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:17:27938)
at Function.from (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:17:28016)
at m.createJupyterSession (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:2:2273774)
at async m.start (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:2:2266672)
at async Function.wrapKernelMethodImpl (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:2:2457988)
Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458MIrg0lx2yeWR.json'] {
category: 'unknown',
originalException: [Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458MIrg0lx2yeWR.json'] {
errno: -2,
code: 'ENOENT',
syscall: 'open',
path: '/tmpstore/kernel-v2-6458MIrg0lx2yeWR.json'
}
}
info 14:54:46.218: Process Execution: > ~/anaconda3/envs/job/bin/python -c "import ipykernel"
Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458MIrg0lx2yeWR.json'] {
category: 'unknown',
originalException: [Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458MIrg0lx2yeWR.json'] {
errno: -2,
code: 'ENOENT',
syscall: 'open',
path: '/tmpstore/kernel-v2-6458MIrg0lx2yeWR.json'
}
}
error 14:54:46.324: Error in execution (get message for cell) [r [Error]:
at new r (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:17:27938)
at Function.from (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:17:28016)
at m.createJupyterSession (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:2:2273774)
at async m.start (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:2:2266672)
at async Function.wrapKernelMethodImpl (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:2:2457988)
Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458MIrg0lx2yeWR.json'] {
category: 'unknown',
originalException: [Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458MIrg0lx2yeWR.json'] {
errno: -2,
code: 'ENOENT',
syscall: 'open',
path: '/tmpstore/kernel-v2-6458MIrg0lx2yeWR.json'
}
}
info 15:39:46.666: Execute Cell 4 /home/ycg/code/connect.ipynb
info 15:39:46.666: Starting Jupyter Session id = 'startUsingPythonInterpreter:.jvsc74a57bd0ffd98003224a5cbb2067fcca58ee33b230044e1ca65670e1d404461254196810./home/ycg/anaconda3/python./home/ycg/anaconda3/python.-m#ipykernel_launcher' (Python Path: /home/ycg/anaconda3, EnvType: Conda, EnvName: 'base', Version: 3.9.7) for '/home/ycg/code/connect.ipynb' (disableUI=false)
info 15:39:46.666: Creating raw notebook for resource '/home/ycg/code/connect.ipynb'
info 15:39:46.667: Computing working directory for resource '/home/ycg/code/connect.ipynb'
info 15:39:46.667: Starting raw kernel 'base (Python 3.9.7)' for interpreter /home/ycg/anaconda3/bin/python
info 15:39:46.678: Kernel launching with ports 9040,9041,9042,9043,9044. Start port is 9000
info 15:39:46.685: Process Execution: > ~/anaconda3/bin/python -c "import ipykernel; print(ipykernel.version); print("5dc3a68c-e34e-4080-9c3e-2a532b2ccb4d"); print(ipykernel.file)"
Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458y7vIGSmgRLhZ.json'] {
category: 'unknown',
originalException: [Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458y7vIGSmgRLhZ.json'] {
errno: -2,
code: 'ENOENT',
syscall: 'open',
path: '/tmpstore/kernel-v2-6458y7vIGSmgRLhZ.json'
}
}
warn 15:39:46.690: Kernel Error, context = start [r [Error]:
at new r (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:17:27938)
at Function.from (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:17:28016)
at m.createJupyterSession (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:2:2273774)
at async m.start (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:2:2266672)
at async Function.wrapKernelMethodImpl (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:2:2457988)
Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458y7vIGSmgRLhZ.json'] {
category: 'unknown',
originalException: [Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458y7vIGSmgRLhZ.json'] {
errno: -2,
code: 'ENOENT',
syscall: 'open',
path: '/tmpstore/kernel-v2-6458y7vIGSmgRLhZ.json'
}
}
info 15:39:46.702: Process Execution: > ~/anaconda3/bin/python -c "import ipykernel"
Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458y7vIGSmgRLhZ.json'] {
category: 'unknown',
originalException: [Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458y7vIGSmgRLhZ.json'] {
errno: -2,
code: 'ENOENT',
syscall: 'open',
path: '/tmpstore/kernel-v2-6458y7vIGSmgRLhZ.json'
}
}
error 15:39:47.549: Error in execution (get message for cell) [r [Error]:
at new r (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:17:27938)
at Function.from (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:17:28016)
at m.createJupyterSession (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:2:2273774)
at async m.start (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:2:2266672)
at async Function.wrapKernelMethodImpl (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:2:2457988)
Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458y7vIGSmgRLhZ.json'] {
category: 'unknown',
originalException: [Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458y7vIGSmgRLhZ.json'] {
errno: -2,
code: 'ENOENT',
syscall: 'open',
path: '/tmpstore/kernel-v2-6458y7vIGSmgRLhZ.json'
}
}
info 15:39:54.922: Starting Jupyter Session id = 'startUsingPythonInterpreter:.jvsc74a57bd0f4f46c0049ab54d43fec2de5dc4e01a5fdc99d9d14d17f1bb906ac9c40e561ab./home/ycg/anaconda3/envs/job/python./home/ycg/anaconda3/envs/job/python.-m#ipykernel_launcher' (Python Path: /home/ycg/anaconda3/envs/job, EnvType: Conda, EnvName: 'job', Version: 3.8.2) for '/home/ycg/code/connect.ipynb' (disableUI=true)
info 15:39:54.923: Creating raw notebook for resource '/home/ycg/code/connect.ipynb'
info 15:39:54.923: Computing working directory for resource '/home/ycg/code/connect.ipynb'
info 15:39:54.935: Starting raw kernel 'job (Python 3.8.2)' for interpreter /home/ycg/anaconda3/envs/job/bin/python
info 15:39:54.944: Kernel launching with ports 9048,9049,9050,9051,9052. Start port is 9000
error 15:39:54.948: Failed to connect raw kernel session: Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458ZAHEORMs726X.json'
warn 15:39:54.950: Error occurred while trying to start the kernel, options.disableUI=true [r [Error]:
at new r (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:17:27938)
at Function.from (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:17:28016)
at m.createJupyterSession (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:2:2273774)
at async m.start (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:2:2266672)
at async Function.wrapKernelMethodImpl (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:2:2457988)
Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458ZAHEORMs726X.json'] {
category: 'unknown',
originalException: [Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458ZAHEORMs726X.json'] {
errno: -2,
code: 'ENOENT',
syscall: 'open',
path: '/tmpstore/kernel-v2-6458ZAHEORMs726X.json'
}
}
info 15:39:55.576: Process Execution: > ~/anaconda3/envs/job/bin/python -m pip list
Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458r8FgaGD2LqM4.json'] {
category: 'unknown',
originalException: [Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458r8FgaGD2LqM4.json'] {
errno: -2,
code: 'ENOENT',
syscall: 'open',
path: '/tmpstore/kernel-v2-6458r8FgaGD2LqM4.json'
}
}
warn 15:39:58.880: Kernel Error, context = start [r [Error]:
at new r (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:17:27938)
at Function.from (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:17:28016)
at m.createJupyterSession (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:2:2273774)
at async m.start (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:2:2266672)
at async Function.wrapKernelMethodImpl (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:2:2457988)
Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458r8FgaGD2LqM4.json'] {
category: 'unknown',
originalException: [Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458r8FgaGD2LqM4.json'] {
errno: -2,
code: 'ENOENT',
syscall: 'open',
path: '/tmpstore/kernel-v2-6458r8FgaGD2LqM4.json'
}
}
info 15:39:58.887: Process Execution: > ~/anaconda3/envs/job/bin/python -c "import ipykernel"
Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458r8FgaGD2LqM4.json'] {
category: 'unknown',
originalException: [Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458r8FgaGD2LqM4.json'] {
errno: -2,
code: 'ENOENT',
syscall: 'open',
path: '/tmpstore/kernel-v2-6458r8FgaGD2LqM4.json'
}
}
error 15:39:59.4: Error in execution (get message for cell) [r [Error]:
at new r (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:17:27938)
at Function.from (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:17:28016)
at m.createJupyterSession (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:2:2273774)
at async m.start (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:2:2266672)
at async Function.wrapKernelMethodImpl (/home/ycg/.vscode/extensions/ms-toolsai.jupyter-2022.7.1001951036/out/extension.node.js:2:2457988)
Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458r8FgaGD2LqM4.json'] {
category: 'unknown',
originalException: [Error: ENOENT: no such file or directory, open '/tmpstore/kernel-v2-6458r8FgaGD2LqM4.json'] {
errno: -2,
code: 'ENOENT',
syscall: 'open',
path: '/tmpstore/kernel-v2-6458r8FgaGD2LqM4.json'
}
}
`
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