chore: update broken links report and markdown files

- Revised the broken links report with updated statistics, now reflecting a total of 2847 links/images checked, with 2441 confirmed as OK and 20 broken links.
- Added detailed entries for newly identified broken links across various references, including specific URLs and their statuses.
- Updated markdown files to remove outdated links and improve formatting, ensuring consistency and clarity throughout the documentation.
- Adjusted image paths in the home page for better accessibility and reliability.

Author: mikepsinn

.gitignore

@@ -44,3 +44,5 @@ tmp/response.md
 broken-urls-report.md
 .link-cache.json
 .claude/settings.local.json
+NUL
+_site-ci-test/

broken-links-report.md

@@ -20,7 +20,7 @@ The [Data and Research Center](https://allofus.nih.gov/funding-and-program-partn
 
 ![](https://static.crowdsourcingcures.org/img/300px-Data_Research_Center.png)
 
-## [Core Protocol](https://allofus.nih.gov/sites/default/files/AOU_Core_Protocol_Redacted_Dec_2021.pdf)
+## Core Protocol
 
 ## All of Us Application Programming Interface (API)
 
@@ -53,4 +53,4 @@ There's another All of Us Research Program GitHub organization at [https://githu
 1.  [https://www.heraldchronicle.com/news/business/vanderbilt-plays-major-role-in-nationwide-all-of-us-research-program/article\_fece68b5-2ae0-5f7c-8132-34d0753ddd6c.html](https://www.heraldchronicle.com/news/business/vanderbilt-plays-major-role-in-nationwide-all-of-us-research-program/article_fece68b5-2ae0-5f7c-8132-34d0753ddd6c.html)
 2.  [https://allofus.nih.gov/funding-and-program-partners/data-and-research-center](https://allofus.nih.gov/funding-and-program-partners/data-and-research-center)
 3.  GA4GH All of Us Research Program Presentation (Orlando, Oct 16)
-4.  [https://allofus.nih.gov/sites/default/files/AOU\_Core\_Protocol\_Redacted\_Dec\_2021.pdf](https://allofus.nih.gov/sites/default/files/AOU_Core_Protocol_Redacted_Dec_2021.pdf)
+4.  All of Us Core Protocol (PDF no longer available)

clinical-trials/all-of-us-research-program.md

@@ -54,6 +54,5 @@ Every Cure is a nonprofit organization dedicated to accelerating the discovery o
 ## Learn More
 
 - [Official Website](https://everycure.org/)
-- [Every Cure Atlas](https://atlas.everycure.org/)
 
 *Last updated: May 2025*

community/nonprofits/every-cure.md

@@ -53,6 +53,5 @@ The Goldwater Institute is a conservative and libertarian public policy think ta
 ## Learn More
 
 - [Official Website](https://www.goldwaterinstitute.org/)
-- [Right to Try Information](https://righttotry.org/)
 
 *Last updated: May 2025*

community/nonprofits/goldwater-institute.md

@@ -52,7 +52,6 @@ The Open Source Pharma Foundation (OSPF) is a global nonprofit organization that
 
 ## Learn More
 
-- [Official Website](https://www.opensourcepharma.net/)
 - [OSDD for TB](https://www.osdd.net/)
 
 *Last updated: May 2025*

community/nonprofits/open-source-pharma-foundation.md

@@ -11,7 +11,7 @@ dateCreated: '2022-07-27T20:31:54.856Z'
 # **Open-Source Projects**
 
 -   [openAutism](https://openautism.github.io/)
--   [Open source Timeline](https://opensourcetimeline.com/)
+-   Open source Timeline
 -   [Patient Data Manager](https://datauseagreement.org/)
 -   [standardhealthrecord.org](https://standardhealthrecord.org/)
 -   [InspiredEHRs.org](https://inspiredehrs.org/)

community/open-source.md

@@ -16,8 +16,8 @@ dateCreated: '2022-07-27T20:39:48.490Z'
 > -   Small adjustment, big impact
 > -   Lose weight sustainably
 > 
-> \-[https://millionfriends.de/](https://millionfriends.de/)
+> \- millionfriends.de (site no longer available)
 
 ## Sources
 
-1.  [https://millionfriends.de/](https://millionfriends.de/)
+1.  millionfriends.de (site no longer available)

community/partners/million-friends.md

@@ -11,7 +11,7 @@ dateCreated: '2023-06-30T21:33:37.395Z'
 Several treatments are being explored for chronic fatigue related to long COVID. Here are some of the most promising ones:
 
 -   [**Low dose naltrexone**](https://nationalpharmacyrx.com/low-dose-naltrexone-and-long-covid/): In open-label single-site studies, cohorts treated with these medications have demonstrated clinical benefit among patients with myalgic encephalomyelitis/chronic fatigue syndrome (ME/CFS), and have subsequently been used off-label for the treatment of long COVID. The average cost of generic naltrexone without insurance is $101 for a 30-day supply. With insurance, the cost can be between $0-$101 for a 30-day supply.
--   [**Low dose aripiprazole**](https://www.verywellhealth.com/low-dose-naltrexone-long-covid-treatment-7507283): The lowest GoodRx price for the most common version of aripiprazole is around $9.00.
+-   **Low dose aripiprazole**: The lowest GoodRx price for the most common version of aripiprazole is around $9.00.
 -   [**Anhydrous Enol-Oxaloacetate capsules**](https://clinicaltrials.gov/ct2/show/NCT05430152): Patients with ME/CFS and long COVID treated with oral Anhydrous Enol-Oxaloacetate capsules achieved significantly reduced fatigue. These are sold under the brand name benaGene and cost approximately $49 for a bottle.
 -   [**Antihistamines**](https://www.medscape.com/viewarticle/978707): In small studies, antihistamines have been shown to reduce some long COVID symptoms, including fatigue, brain fog, and an inability to concentrate. A month’s supply of a generic antihistamine can be purchased over the counter for about $10-$20.
 -   [**Pyridostigmine**](https://www.medscape.com/viewarticle/978707): Pyridostigmine, an acetylcholinesterase inhibitor, is approved for the treatment of muscle weakness and is under investigation for treating the constellation of overlapping symptoms associated with ME/CFS, long COVID, and dysautonomia. The cost for a pyridostigmine oral tablet of 60 mg is around $19 for a supply of 30 tablets.

conditions/long-covid.md

@@ -34,7 +34,7 @@ The National Institutes of Health (NIH) annual budget of $51 billion represents
    - Cost burden ultimately falls on patients
 
 3. **Delayed Access to Treatments**
-   - [120,000 Deaths/Decade](https://www.fdareview.org/features/references/#gieringer85) due to regulatory delays
+   - [120,000 Deaths/Decade](https://web.archive.org/web/2024/https://www.fdareview.org/features/references/#gieringer85) due to regulatory delays
    - [17 years](https://pmc.ncbi.nlm.nih.gov/articles/PMC3241518/) average time from discovery to patient access
 
 4. **Limited Disease Coverage**
@@ -89,6 +89,6 @@ The National Institutes of Health (NIH) annual budget of $51 billion represents
 1. HHS Budget Overview (FY 2025): $51 billion NIH budget
 2. JAMA Internal Medicine: [Clinical Trial Costs](https://pmc.ncbi.nlm.nih.gov/articles/PMC7295430/)
 3. Nature: [Untested Treatments](https://www.nature.com/articles/549445a)
-4. FDA Review: [Regulatory Delay Deaths](https://www.fdareview.org/features/references/#gieringer85)
+4. FDA Review: [Regulatory Delay Deaths](https://web.archive.org/web/2024/https://www.fdareview.org/features/references/#gieringer85)
 5. NCBI: [Treatment Development Timeline](https://pmc.ncbi.nlm.nih.gov/articles/PMC3241518/)
 6. NCATS: [Rare Disease Treatment Gap](https://ncats.nih.gov/sites/default/files/NCATS_RareDiseasesFactSheet.pdf)