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README.md

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[![Build Status](https://travis-ci.org/mikessh/migec.svg?branch=master)](https://travis-ci.org/mikessh/migec)
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[![RepSeq](http://statsarray.com/wp-content/uploads/2014/03/omictools-logo.png)](http://omictools.com/migec-s5023.html)
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# MiGEC: Molecular Identifier Guided Error Correction pipeline
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Several modules of the pipeline, such as de-multiplexing and CDR3 extraction could be utilized for a wider range of datasets.
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Compiled binaries are available from [here](https://github.com/mikessh/migec/releases/latest).
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The software is cross-platform and requires Java v1.8 to run.
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Easy installation on MacOS/Linux via [Homebrew](http://brew.sh/) or [Linuxbrew](http://linuxbrew.sh/):
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```bash
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brew tap mikessh/repseq
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brew install migec
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```
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For more details please see the [paper](http://www.nature.com/nmeth/journal/v11/n6/abs/nmeth.2960.html) describing MiGEC.
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Full documentation is provided via [ReadTheDocs](http://migec.readthedocs.org/en/latest/index.html). You might be also interested in taking the following [tutorial](http://repseq-tutorial.readthedocs.org/en/latest/).

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