lint: ruff as a formatter.

Author: paquiteau

.github/workflows/test.yml

@@ -42,8 +42,8 @@ jobs:
           pip install -e .[dev]
       - name: Linters
         run: |
-          black --check src tests
-          ruff check .
+          ruff check src
+          ruff format --check src
       - name: Annotate locations with typos
         if: always()
         uses: codespell-project/codespell-problem-matcher@v1

src/snake/_meta.py

@@ -158,7 +158,6 @@ class ENVCONFIG(metaclass=Singleton):
 
     @classmethod
     def __getitem__(cls, key: str) -> Any:
-
         if key in os.environ:
             return os.environ[key]
         return getattr(cls, key)

src/snake/core/handlers/base.py

@@ -15,6 +15,7 @@
 
 T = TypeVar("T")
 
+
 @dataclass_transform(kw_only_default=True)
 class MetaHandler(MetaDCRegister):
     """MetaClass for Handlers."""

src/snake/core/phantom/shepp_logan.py

@@ -82,7 +82,7 @@ def mr_shepp_logan(
 
     # Make sure zlims are appropriate
     assert len(zlims) == 2, (
-        "zlims must be a tuple with 2 entries: upper and lower " "bounds!"
+        "zlims must be a tuple with 2 entries: upper and lower bounds!"
     )
     assert zlims[0] <= zlims[1], "zlims: lower bound must be first entry!"
 
@@ -179,7 +179,6 @@ def mr_ellipsoid_parameters() -> np.ndarray:
     # Need to subtract some ellipses here...
     Eneg = np.zeros(E.shape)
     for ii in range(E.shape[0]):
-
         # Ellipsoid geometry
         Eneg[ii, :7] = E[ii, :7]
 

src/snake/core/sampling/base.py

@@ -12,7 +12,7 @@
 import ismrmrd as mrd
 
 
-@dataclass_transform(kw_only_default=True) # Required here for pyright to work.
+@dataclass_transform(kw_only_default=True)  # Required here for pyright to work.
 class MetaSampler(MetaDCRegister):
     """MetaClass for Samplers."""
 

src/snake/toolkit/plotting.py

@@ -313,7 +313,7 @@ def axis3dcut(
             bbox_[i],
             bg_cmap=bg_cmap,
             z_thresh=z_thresh,
-            z_max=z_max
+            z_max=z_max,
         )
 
     if cbar:
@@ -324,7 +324,14 @@ def axis3dcut(
             im.set_clim(-z_max, z_max)
             matplotlib.colorbar.Colorbar(cax, im, orientation="vertical")
             cax.set_ylabel("z-scores", labelpad=-20)
-            cax.set_yticks(np.concatenate([-np.arange(z_thresh, z_max+1, 2), np.arange(z_thresh, z_max+1, 2)]))
+            cax.set_yticks(
+                np.concatenate(
+                    [
+                        -np.arange(z_thresh, z_max + 1, 2),
+                        np.arange(z_thresh, z_max + 1, 2),
+                    ]
+                )
+            )
         else:
             # use the background image
             if vmin_vmax is None: