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Refine README content and formatting
Updated terminology and formatting in the README for clarity.
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README.md

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# ChromoSim
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1D ion-exchange chromatography column simulator (mechanistic; multi-species; gradient; FPLC-style outputs)
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1D ion-exchange chromatography column simulator (mechanistic model; multi-species; with gradient; FPLC-style outputs)
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**ChromoSim** simulates axial convection–dispersion with competitive Langmuir binding. Affinity can be constant (e.g., proteins) or mapped to a per-species property (e.g., surface potential) with salt-dependent screening. Outputs: breakthrough curves, in-column heatmaps, and an FPLC-style trace (mL / pseudo-mAU) with a %B overlay.
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## What the model solves
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**Mobile phase for species \(i\):**
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$$
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\partial_t C_i \;=\; -u\,\partial_z C_i \;+\; D_{\mathrm{ax}}\,\partial_{zz} C_i
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\;-\; \frac{1-\varepsilon}{\varepsilon}\,\partial_t Q_i .
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$$
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**Mobile phase for species i:**
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$$\partial_t C_i = -u \partial_z C_i + D_{\mathrm{ax}} \partial_{zz} C_i - \frac{1-\varepsilon}{\varepsilon} \partial_t Q_i$$
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**Wall phase (competitive Langmuir):**
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$$
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\partial_t Q_i \;=\; k_{a,i}\,C_i\Big(Q_{\max}-\sum_j Q_j\Big) \;-\; k_{d,i}\,Q_i .
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$$
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$$\partial_t Q_i = k_{a,i} C_i\Big(Q_{\max}-\sum_j Q_j\Big) - k_{d,i}Q_i$$
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**Optional affinity map:**
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$$
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K_i \;\equiv\; \frac{k_{a,i}}{k_{d,i}}
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\;=\; K^\circ \exp\!\big(\gamma\,|P_i|\,f(I)\big).
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$$
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Use constant \(K_i\) by setting \(\gamma=0\).
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$$K_i \equiv \frac{k_{a,i}}{k_{d,i}} = K^\circ \exp\big(\gamma\,|P_i|\,f(I)\big)$$
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(Use constant $K_i$ by setting $\gamma=0$.)
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## Repo layout
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