Merge pull request #126 from miykael/fix_pybids_version

FIX: fix pybids to version 0.6.5

Author: miykael

Dockerfile

@@ -1,5 +1,5 @@
 # Generated by Neurodocker version 0.4.2-dev
-# Timestamp: 2018-10-05 19:25:17 UTC
+# Timestamp: 2018-10-09 19:14:50 UTC
 # 
 # Thank you for using Neurodocker. If you discover any issues
 # or ways to improve this software, please submit an issue or
@@ -126,7 +126,7 @@ RUN export PATH="/opt/miniconda-latest/bin:$PATH" \
     && bash -c "source activate neuro \
     &&   pip install --no-cache-dir  \
              https://github.com/nipy/nipype/tarball/master \
-             https://github.com/INCF/pybids/tarball/master \
+             https://github.com/INCF/pybids/tarball/0.6.5 \
              nilearn \
              datalad[full] \
              nipy \
@@ -232,7 +232,7 @@ RUN echo '{ \
     \n        ], \
     \n        "pip_install": [ \
     \n          "https://github.com/nipy/nipype/tarball/master", \
-    \n          "https://github.com/INCF/pybids/tarball/master", \
+    \n          "https://github.com/INCF/pybids/tarball/0.6.5", \
     \n          "nilearn", \
     \n          "datalad[full]", \
     \n          "nipy", \

Singularity

@@ -1,5 +1,5 @@
 # Generated by Neurodocker version 0.4.2-dev
-# Timestamp: 2018-10-05 19:25:19 UTC
+# Timestamp: 2018-10-09 19:14:51 UTC
 # 
 # Thank you for using Neurodocker. If you discover any issues
 # or ways to improve this software, please submit an issue or
@@ -116,7 +116,7 @@ sync && conda clean -tipsy && sync
 bash -c "source activate neuro
   pip install --no-cache-dir  \
       https://github.com/nipy/nipype/tarball/master \
-      https://github.com/INCF/pybids/tarball/master \
+      https://github.com/INCF/pybids/tarball/0.6.5 \
       nilearn \
       datalad[full] \
       nipy \
@@ -226,7 +226,7 @@ echo '{
 \n        ],
 \n        "pip_install": [
 \n          "https://github.com/nipy/nipype/tarball/master",
-\n          "https://github.com/INCF/pybids/tarball/master",
+\n          "https://github.com/INCF/pybids/tarball/0.6.5",
 \n          "nilearn",
 \n          "datalad[full]",
 \n          "nipy",

generate.sh

@@ -17,7 +17,7 @@ generate_docker() {
              conda_install="python=3.6 pytest jupyter jupyterlab jupyter_contrib_nbextensions
                             traits pandas matplotlib scikit-learn scikit-image seaborn nbformat nb_conda" \
              pip_install="https://github.com/nipy/nipype/tarball/master
-                          https://github.com/INCF/pybids/tarball/master
+                          https://github.com/INCF/pybids/tarball/0.6.5
                           nilearn datalad[full] nipy duecredit nbval" \
              create_env="neuro" \
              activate=True \
@@ -54,7 +54,7 @@ generate_singularity() {
              conda_install="python=3.6 pytest jupyter jupyterlab jupyter_contrib_nbextensions
                             traits pandas matplotlib scikit-learn scikit-image seaborn nbformat nb_conda" \
              pip_install="https://github.com/nipy/nipype/tarball/master
-                          https://github.com/INCF/pybids/tarball/master
+                          https://github.com/INCF/pybids/tarball/0.6.5
                           nilearn datalad[full] nipy duecredit nbval" \
              create_env="neuro" \
              activate=True \