Run full test suite, not just doctests

Author: stefanv

.github/workflows/nightly-wheel-build.yaml

@@ -24,8 +24,7 @@ jobs:
         PIP_EXTRA_INDEX_URL="https://pypi.anaconda.org/scientific-python-nightly-wheels/simple"
       # assert NumPy 2.0 before running tests
       CIBW_TEST_COMMAND: >
-        pip list --pre --format=freeze | grep -q 'numpy==2' &&
-        (cd .. && pytest --pyargs skimage)
+        pip list --pre --format=freeze | grep -q 'numpy==2' && pytest
 
   upload_anaconda:
     permissions:

.github/workflows/test-linux.yaml

@@ -125,7 +125,7 @@ jobs:
           # A lazy loader configuration parameter
           EAGER_IMPORT: ${{ matrix.EAGER_IMPORT }}
         run: |
-          (cd .. && $PYTEST --doctest-plus --showlocals --pyargs skimage)
+          $PYTEST --doctest-plus --showlocals
 
       - name: Check benchmarks
         run: |
@@ -175,7 +175,7 @@ jobs:
           # A lazy loader configuration parameter
           EAGER_IMPORT: ${{ matrix.EAGER_IMPORT }}
         run: |
-          (cd .. && $PYTEST --doctest-plus --showlocals --pyargs skimage)
+          (cd .. && $PYTEST --doctest-plus --showlocals)
 
   report-failures:
     runs-on: ubuntu-latest

.github/workflows/test-macos.yaml

@@ -69,7 +69,7 @@ jobs:
 
       - name: Run tests
         run: |
-          (cd .. && $PYTEST --doctest-plus --showlocals --pyargs skimage)
+          $PYTEST --doctest-plus --showlocals
 
       - name: Check benchmarks
         run: |

.github/workflows/test-nightlies-on-main.yaml

@@ -62,7 +62,7 @@ jobs:
 
       - name: Run tests
         run: |
-          (cd .. && $PYTEST --doctest-plus --showlocals --pyargs skimage)
+          $PYTEST --doctest-plus --showlocals
 
       - name: "Job has failed: reporting"
         if: ${{ failure() && github.ref == 'refs/heads/main' }}

.github/workflows/test-windows.yaml

@@ -92,7 +92,7 @@ jobs:
       - name: Run tests
         shell: bash
         run: |
-          (cd .. && $PYTEST --doctest-plus --showlocals --pyargs skimage)
+          $PYTEST --doctest-plus --showlocals
 
       - name: "Job has failed: reporting"
         if: ${{ failure() && github.ref == 'refs/heads/main' }}

.github/workflows/wheels-recipe.yaml

@@ -16,7 +16,7 @@ on:
       CIBW_TEST_COMMAND:
         required: false
         type: string
-        default: "pytest --pyargs skimage"
+        default: "pytest"
 
 env:
   CIBW_BUILD_VERBOSITY: 1
@@ -56,7 +56,7 @@ jobs:
         if: endsWith(matrix.cibw_python, 't-*')
         run: |
           NIGHTLY_PIP_ARGS="--pre --extra-index-url https://pypi.anaconda.org/scientific-python-nightly-wheels/simple --only-binary :all:"
-          TEST_COMMAND="PYTHON_GIL=0 pytest --pyargs skimage"
+          TEST_COMMAND="PYTHON_GIL=0 pytest"
           echo "CIBW_ENABLE=cpython-prerelease cpython-freethreading" >> $GITHUB_ENV
           # Remove once Cython is out that supports free-threaded build
           echo "CIBW_BUILD_FRONTEND=pip; args: $NIGHTLY_PIP_ARGS" >> $GITHUB_ENV
@@ -278,4 +278,4 @@ jobs:
           CIBW_TEST_REQUIRES_PYODIDE: "pytest astropy cloudpickle dask[array] matplotlib PyWavelets scikit-learn"
           # Don't use the cache provider plugin, as it doesn't work with Pyodide
           # right now: https://github.com/pypa/cibuildwheel/issues/1966
-          CIBW_TEST_COMMAND_PYODIDE: "pytest -svra -p no:cacheprovider --pyargs skimage"
+          CIBW_TEST_COMMAND_PYODIDE: "pytest -svra -p no:cacheprovider"