fix: update dependencies

Author: lpatiny

package.json

@@ -55,32 +55,32 @@
     "trailingComma": "all"
   },
   "devDependencies": {
-    "@babel/plugin-transform-modules-commonjs": "^7.17.9",
-    "@babel/preset-typescript": "^7.16.7",
-    "@types/jest": "^27.5.0",
+    "@babel/plugin-transform-modules-commonjs": "^7.21.2",
+    "@babel/preset-typescript": "^7.21.0",
+    "@types/jest": "^29.5.0",
     "chemcalc": "^3.4.1",
-    "cheminfo-build": "^1.1.11",
-    "eslint": "^8.14.0",
-    "eslint-config-cheminfo-typescript": "^10.4.0",
-    "eslint-plugin-jest": "^26.1.5",
+    "cheminfo-build": "^1.2.0",
+    "eslint": "^8.36.0",
+    "eslint-config-cheminfo-typescript": "^11.3.1",
+    "eslint-plugin-jest": "^27.2.1",
     "esm": "^3.2.25",
-    "jest": "^28.1.0",
+    "jest": "^29.5.0",
     "jest-matcher-deep-close-to": "^3.0.2",
-    "mf-global": "^1.4.24",
+    "mf-global": "^2.1.2",
     "ml-stat": "^1.3.3",
-    "nodemon": "^2.0.16",
-    "prettier": "^2.6.2",
-    "rimraf": "^3.0.2",
-    "spectrum-generator": "^8.0.1",
-    "typescript": "^4.6.4",
-    "xy-parser": "^5.0.2"
+    "nodemon": "^2.0.22",
+    "prettier": "^2.8.7",
+    "rimraf": "^4.4.1",
+    "spectrum-generator": "^8.0.6",
+    "typescript": "^5.0.2",
+    "xy-parser": "^5.0.4"
   },
   "dependencies": {
     "@lukeed/uuid": "^2.0.0",
-    "cheminfo-types": "^1.1.0",
-    "ml-peak-shape-generator": "^4.1.1",
+    "cheminfo-types": "^1.4.0",
+    "ml-peak-shape-generator": "^4.1.2",
     "ml-savitzky-golay-generalized": "^4.0.1",
-    "ml-spectra-fitting": "^4.1.1",
-    "ml-spectra-processing": "^11.6.0"
+    "ml-spectra-fitting": "^4.2.1",
+    "ml-spectra-processing": "^12.0.0"
   }
 }

src/gsd.ts

@@ -3,7 +3,7 @@ import type { DataXY } from 'cheminfo-types';
 import { sgg, SGGOptions } from 'ml-savitzky-golay-generalized';
 import {
   xIsEquallySpaced,
-  xIsMonotoneIncreasing,
+  xIsMonotonic,
   xMinValue,
   xMaxValue,
   xNoiseStandardDeviation,
@@ -71,7 +71,7 @@ export function gsd(data: DataXY, options: GSDOptions = {}): GSDPeakID[] {
   } = options;
 
   let { x, y } = data;
-  if (!xIsMonotoneIncreasing(x)) {
+  if (xIsMonotonic(x) !== 1) {
     throw new Error('GSD only accepts monotone increasing x values');
   }
   //rescale;
@@ -92,13 +92,11 @@ export function gsd(data: DataXY, options: GSDOptions = {}): GSDPeakID[] {
     } else {
       noiseLevel = 0;
     }
-  } else {
-    if (maxCriteria === false) {
-      noiseLevel *= -1;
-    }
+  } else if (!maxCriteria) {
+    noiseLevel *= -1;
   }
 
-  if (maxCriteria === false) {
+  if (!maxCriteria) {
     for (let i = 0; i < y.length; i++) {
       y[i] *= -1;
     }

src/post/broadenPeaks.ts

@@ -48,9 +48,10 @@ export function broadenPeaks<T extends GSDPeakOptionalShape>(
       let nextPeak = peaks[i + 1];
       if (peak.to.x > nextPeak.from.x) {
         // we do it proportional to the width of the peaks
-        peak.to.x = nextPeak.from.x =
+        peak.to.x =
           (peak.width / (nextPeak.width + peak.width)) * (nextPeak.x - peak.x) +
           peak.x;
+        nextPeak.from.x = peak.to.x;
       }
     }
   }

src/utils/optimizeTop.ts

@@ -20,28 +20,22 @@ export function optimizeTop<T extends { index: number; x: number; y: number }>(
       y[currentIndex - 1] >= y[currentIndex]
     ) {
       currentIndex--;
-    } else {
-      if (
+    } else if (
         y[currentIndex + 1] >= y[currentIndex] &&
         y[currentIndex + 1] >= y[currentIndex + 2]
       ) {
         currentIndex++;
-      } else {
-        if (
+      } else if (
           y[currentIndex - 2] >= y[currentIndex - 3] &&
           y[currentIndex - 2] >= y[currentIndex - 1]
         ) {
           currentIndex -= 2;
-        } else {
-          if (
+        } else if (
             y[currentIndex + 2] >= y[currentIndex + 1] &&
             y[currentIndex + 2] >= y[currentIndex + 3]
           ) {
             currentIndex += 2;
           }
-        }
-      }
-    }
     // interpolation to a sin() function
     if (
       y[currentIndex - 1] > 0 &&