fix: update dependencies

Author: targos

.github/workflows/documentationjs.yml

@@ -1,6 +1,7 @@
 name: Deploy documentation.js on GitHub pages
 
 on:
+  workflow_dispatch:
   release:
     types: [published]
 

.github/workflows/lactame.yml

@@ -4,16 +4,19 @@ on:
   release:
     types: [published]
 
+env:
+  NODE_VERSION: 14.x
+
 jobs:
   deploy:
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v2
       - name: Get package name
-        run: echo "PACKAGENAME=$(jq .name package.json | tr -d '"')" >> $GITHUB_ENV
-      - uses: actions/setup-node@v2-beta
+        run: echo "PACKAGE_NAME=$(jq .name package.json | tr -d '"')" >> $GITHUB_ENV
+      - uses: actions/setup-node@v2
         with:
-          node-version: 14.x
+          node-version: ${{ env.NODE_VERSION }}
       - name: Install dependencies
         run: npm install
       - name: Build project
@@ -22,5 +25,5 @@ jobs:
         uses: zakodium/lactame-action@v1
         with:
           token: ${{ secrets.LACTAME_TOKEN }}
-          name: "${{env.PACKAGENAME}}"
+          name: ${{ env.PACKAGE_NAME }}
           folder: dist

.github/workflows/nodejs.yml

@@ -5,14 +5,17 @@ on:
     branches: master
   pull_request:
 
+env:
+  NODE_VERSION: 14.x
+
 jobs:
   lint:
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v2
-      - uses: actions/setup-node@v2-beta
+      - uses: actions/setup-node@v2
         with:
-          node-version: 14.x
+          node-version: ${{ env.NODE_VERSION }}
       - name: Install dependencies
         run: npm install
       - name: Run ESLint
@@ -22,10 +25,11 @@ jobs:
     strategy:
       matrix:
         node-version: [10.x, 12.x, 14.x, 15.x]
+      fail-fast: false
     steps:
       - uses: actions/checkout@v2
       - name: Use Node.js ${{ matrix.node-version }}
-        uses: actions/setup-node@v2-beta
+        uses: actions/setup-node@v2
         with:
           node-version: ${{ matrix.node-version }}
       - name: Install dependencies

.github/workflows/release.yml

@@ -5,28 +5,33 @@ on:
     branches:
       - master
 
+env:
+  NODE_VERSION: 14.x
+
 jobs:
   release-please:
     runs-on: ubuntu-latest
     steps:
-      - uses: GoogleCloudPlatform/[email protected]
+      - name: Get package name
+        run: echo "PACKAGE_NAME=$(jq .name package.json | tr -d '"')" >> $GITHUB_ENV
+      - uses: GoogleCloudPlatform/release-please-action@v2
         id: release
         with:
           token: ${{ secrets.BOT_TOKEN }}
           release-type: node
-          package-name: 'ml-gsd'
+          package-name: ${{ env.PACKAGE_NAME }}
           bump-minor-pre-major: Yes
       - uses: actions/checkout@v2
         # These if statements ensure that a publication only occurs when a new release is created
         if: ${{ steps.release.outputs.release_created }}
-      - uses: actions/setup-node@v2-beta
+      - uses: actions/setup-node@v2
         with:
-          node-version: 14.x
+          node-version: ${{ env.NODE_VERSION }}
           registry-url: 'https://registry.npmjs.org'
         if: ${{ steps.release.outputs.release_created }}
       - run: npm install
         if: ${{ steps.release.outputs.release_created }}
-      - run: npm publish
+      - run: npm publish  --access public
         env:
           NODE_AUTH_TOKEN: ${{ secrets.NPM_BOT_TOKEN }}
         if: ${{ steps.release.outputs.release_created }}

CHANGELOG.md

@@ -89,3 +89,64 @@
 ### Miscellaneous Chores
 
 * update travis ([3120a4a](https://www.github.com/mljs/global-spectral-deconvolution/commit/3120a4a673d4d1826e92c3073a7803eef07b8d4b))
+
+# [5.0.0](https://github.com/mljs/global-spectral-deconvolution/compare/v4.0.0...v5.0.0) (2020-05-19)
+
+
+
+# [4.0.0](https://github.com/mljs/global-spectral-deconvolution/compare/v3.0.1...v4.0.0) (2020-03-20)
+
+
+### Features
+
+* broadenPeaks takes into account the inflection points if available ([d9302c7](https://github.com/mljs/global-spectral-deconvolution/commit/d9302c74a937f1202dc0898b0ca86bf684edf2c2))
+
+
+
+## [3.0.1](https://github.com/mljs/global-spectral-deconvolution/compare/v3.0.0...v3.0.1) (2020-02-28)
+
+
+
+# [3.0.0](https://github.com/mljs/global-spectral-deconvolution/compare/v2.0.6...v3.0.0) (2020-02-27)
+
+
+
+## [2.0.5](https://github.com/mljs/global-spectral-deconvolution/compare/v2.0.4...v2.0.5) (2019-01-09)
+
+
+
+## [2.0.4](https://github.com/mljs/global-spectral-deconvolution/compare/v2.0.3...v2.0.4) (2019-01-09)
+
+
+
+<a name="2.0.3"></a>
+## [2.0.3](https://github.com/mljs/global-spectral-deconvolution/compare/v2.0.2...v2.0.3) (2018-11-01)
+
+
+
+<a name="2.0.2"></a>
+## [2.0.2](https://github.com/mljs/global-spectral-deconvolution/compare/v2.0.1...v2.0.2) (2018-08-03)
+
+
+
+<a name="2.0.0"></a>
+# [2.0.0](https://github.com/mljs/global-spectral-deconvolution/compare/v1.1.6...v2.0.0) (2016-11-08)
+
+
+### Bug Fixes
+
+* **gsd:** more understandable variable names ([e8e9ccb](https://github.com/mljs/global-spectral-deconvolution/commit/e8e9ccb))
+
+
+### Features
+
+* **gsd:** fix a threshold for first derivative ([4cd0fbb](https://github.com/mljs/global-spectral-deconvolution/commit/4cd0fbb))
+* **gsd:** returns as option the boundaries and real height of each peak ([cf7d895](https://github.com/mljs/global-spectral-deconvolution/commit/cf7d895))
+
+
+### BREAKING CHANGES
+
+* gsd: rename i for index
+
+
+

History.md

@@ -1,14 +1,15 @@
 # global-spectral-deconvolution
 
 [![NPM version][npm-image]][npm-url]
-[![David deps][david-image]][david-url]
+[![build status][ci-image]][ci-url]
+[![Test coverage][codecov-image]][codecov-url]
 [![npm download][download-image]][download-url]
 
 Global Spectra Deconvolution + Peak optimizer
 
 `gsd`is using an algorithm that is searching for inflection points to determine the position of peaks and the width of the peaks are between the 2 inflection points. The result of GSD yield to an array of object containing {x, y and width}. However this width is based on the inflection point and may be different from the 'fwhm' (Full Width Half Maximum).
 
-The second algorithm (`optimizePeaks`) will optimize the width as a FWHM to match the original peak. After optimization the width with therefore be always FWHM whichever is the function used. 
+The second algorithm (`optimizePeaks`) will optimize the width as a FWHM to match the original peak. After optimization the width with therefore be always FWHM whichever is the function used.
 
 ## [API documentation](http://mljs.github.io/global-spectral-deconvolution/)
 
@@ -83,18 +84,17 @@ console.log(peaks); // array of peaks {x,y,width}, width = distance between infl
 
 let optimized = optimizePeaks(data, peaks);
 console.log(optimized); // array of peaks {x,y,width}, width = FWHM
-
-
-
 ```
 
 ## License
 
 [MIT](./LICENSE)
 
-[npm-image]: https://img.shields.io/npm/v/ml-gsd.svg?style=flat-square
+[npm-image]: https://img.shields.io/npm/v/ml-gsd.svg
 [npm-url]: https://npmjs.org/package/ml-gsd
-[david-image]: https://img.shields.io/david/mljs/global-spectral-deconvolution.svg?style=flat-square
-[david-url]: https://david-dm.org/mljs/global-spectral-deconvolution
-[download-image]: https://img.shields.io/npm/dm/ml-gsd.svg?style=flat-square
+[codecov-image]: https://img.shields.io/codecov/c/github/mljs/global-spectral-deconvolution.svg
+[codecov-url]: https://codecov.io/gh/mljs/global-spectral-deconvolution
+[ci-image]: https://github.com/mljs/global-spectral-deconvolution/workflows/Node.js%20CI/badge.svg?branch=master
+[ci-url]: https://github.com/mljs/global-spectral-deconvolution/actions?query=workflow%3A%22Node.js+CI%22
+[download-image]: https://img.shields.io/npm/dm/ml-gsd.svg
 [download-url]: https://npmjs.org/package/ml-gsd

README.md

@@ -54,30 +54,27 @@
     "trailingComma": "all"
   },
   "devDependencies": {
-    "@babel/plugin-transform-modules-commonjs": "^7.12.1",
-    "@types/jest": "^26.0.19",
+    "@babel/plugin-transform-modules-commonjs": "^7.13.8",
+    "@types/jest": "^26.0.21",
     "chemcalc": "^3.4.1",
-    "cheminfo-build": "^1.1.8",
-    "eslint": "^7.15.0",
-    "eslint-config-cheminfo": "^5.2.2",
-    "eslint-plugin-import": "^2.22.1",
-    "eslint-plugin-jest": "^24.1.3",
-    "eslint-plugin-prettier": "^3.3.0",
+    "cheminfo-build": "^1.1.10",
+    "eslint": "^7.22.0",
+    "eslint-config-cheminfo": "^5.2.3",
     "esm": "^3.2.25",
     "jest": "^26.6.3",
     "jest-matcher-deep-close-to": "^2.0.1",
-    "mf-global": "^1.3.0",
+    "mf-global": "^1.3.4",
     "ml-stat": "^1.3.3",
-    "nodemon": "^2.0.6",
+    "nodemon": "^2.0.7",
     "prettier": "^2.2.1",
-    "rollup": "^2.35.1",
-    "spectrum-generator": "^4.6.0",
-    "xy-parser": "^3.0.0"
+    "rollup": "^2.42.3",
+    "spectrum-generator": "^4.7.1",
+    "xy-parser": "^3.1.1"
   },
   "dependencies": {
-    "ml-peak-shape-generator": "^0.12.0",
+    "ml-peak-shape-generator": "^1.0.0",
     "ml-savitzky-golay-generalized": "2.0.3",
-    "ml-spectra-fitting": "^0.13.0",
-    "ml-spectra-processing": "^4.10.0"
+    "ml-spectra-fitting": "^1.0.0",
+    "ml-spectra-processing": "^5.8.0"
   }
 }