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We find that selection pressure, spatial structure, and ecology have distinct effects on phylogenetic metrics, although these effects are complex and not always intuitive.
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We also find that, while low-resolution phylogenetic reconstructions can bias some phylogenetic metrics, high-resolution reconstructions recapitulate them faithfully.
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bibtex: |-
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@inproceedings{moreno2023toward,
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author = {Moreno, Matthew Andres and Dolson, Emily and Rodriguez-Papa, Santiago},
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title = "{Toward Phylogenetic Inference of Evolutionary Dynamics at Scale}",
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volume = {ALIFE 2023: The 2023 Conference on Artificial Life},
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series = {ALIFE 2023: The 2023 Conference on Artificial Life},
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year = {in print},
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@proceedings{moreno2023toward,
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author = {Moreno, Matthew Andres and Dolson, Emily and Rodriguez-Papa, Santiago},
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title = "{Toward Phylogenetic Inference of Evolutionary Dynamics at Scale}",
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volume = {ALIFE 2023: Ghost in the Machine: Proceedings of the 2023 Artificial Life Conference},
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series = {ALIFE 2023: Ghost in the Machine: Proceedings of the 2023 Artificial Life Conference},
citation: 'Matthew Andres Moreno, Emily Dolson, and Santiago Rodriguez-Papa; in print. "Toward Phylogenetic Inference of Evolutionary Dynamics at Scale." Proceedings of the ALIFE 2023: The 2023 Conference on Artificial Life. ALIFE 2023: The 2023 Conference on Artificial Life. Online.'
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citation: 'Matthew Andres Moreno, Emily Dolson, Santiago Rodriguez-Papa; July 24–28, 2023. "Toward Phylogenetic Inference of Evolutionary Dynamics at Scale." Proceedings of the ALIFE 2023: Ghost in the Machine: Proceedings of the 2023 Artificial Life Conference. ALIFE 2023: Ghost in the Machine: Proceedings of the 2023 Artificial Life Conference. Online. (pp. 79). ASME. https://doi.org/10.1162/isal_a_00694'
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supporting_materials: |
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- [data](https://osf.io/vtxwd/) [via Open Science Framework ❋](https://osf.io)
- [artificial life conference slides](https://docs.google.com/presentation/d/119jvewHwkdfrVGmy-H9L-S4ow6WC2H_QxG3wJxW_gCg/) [via Google Slides](https://workspace.google.com/products/slides/)
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