Skip to content

Commit d2ba9d5

Browse files
committed
Add in print GPTP chapter
1 parent 0533f5b commit d2ba9d5

File tree

2 files changed

+48
-0
lines changed

2 files changed

+48
-0
lines changed

_data/effluvia.yml

Lines changed: 3 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,9 @@
11
- title: "📚 Journal Publications"
22
slug: "journal"
33
open: true
4+
- title: "📖 Book Chapters"
5+
slug: "chapter"
6+
open: true
47
- title: "🧳 Conference Papers"
58
slug: "conference"
69
open: true
Lines changed: 45 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,45 @@
1+
---
2+
layout: efflux
3+
title: "Methods for Rich Phylogenetic Inference Over Distributed Sexual Populations"
4+
date: 2023-07-24
5+
permalink: "/pubs/:title"
6+
category: chapter
7+
download: https://github.com/mmore500/hstrat-recomb-concept/releases/download/v1.1.1/hstrat-recomb-concept.pdf
8+
view_publisher: https://link.springer.com/book/9789819984121
9+
authors:
10+
- Matthew Andres Moreno
11+
venue: Genetic Programming Theory and Practice XX
12+
projects:
13+
- hstrat
14+
abstract: |
15+
The structure of relatedness among members of an evolved population tells much of its evolutionary history.
16+
In application-oriented evolutionary computation (EC), such phylogenetic information can guide algorithm selection and tuning.
17+
Although traditional direct tracking approaches provide the perfect phylogenetic record, sexual recombination complicates management and analysis of this data.
18+
Taking inspiration from biological science, this work explores a reconstruction-based approach that uses end-state genetic information to estimate phylogenetic history after the fact.
19+
We apply recently-developed "hereditary stratigraphy" genome annotations to lineages with sexual recombination to design devices germane to species phylogenies and gene trees.
20+
As shown through a series of validation experiments, proposed instrumentation can discern genealogical history, population size changes, and selective sweeps.
21+
Fully decentralized by nature, these methods afford new observability at scale, in particular, for distributed EC systems.
22+
Such capabilities anticipate continued growth of computational resources available to EC.
23+
Accompanying open source software aims to expedite application of reconstruction-based phylogenetic analysis where pertinent.
24+
bibtex: |-
25+
@inproceedings{moreno2024methods,
26+
author = {Moreno, Matthew Andres},
27+
editor = {Winkler, Stephan
28+
and Trujillo, Leonardo
29+
and Ofria, Charles
30+
and Hu, Ting},
31+
title = {Methods for Rich Phylogenetic Inference Over Distributed Sexual Populations},
32+
booktitle = {Genetic Programming Theory and Practice XX},
33+
year = {in print},
34+
publisher = {Springer International Publishing},
35+
isbn = {978-981-99-8413-8}
36+
}
37+
citation: in print
38+
supporting_materials: |
39+
- [data](https://osf.io/xj5pn/) [via Open Science Framework ❋](https://osf.io)
40+
- [source code](https://github.com/mmore500/hstrat-recomb-concept/tree/master) [via GitHub <i class="icon-github-1"></i>](https://github.com/)
41+
- [hstrat library code](https://github.com/mmore500/hstrat/tree/v1.6.1) [via GitHub <i class="icon-github-1"></i>](https://github.com/)
42+
- [conference slides](https://docs.google.com/presentation/d/1ZgkqB70hWHAu_hTCbByTgmZO8KqWdP4e/edit?usp=sharing&ouid=104286302849794528312) [via Google Slides](https://workspace.google.com/products/slides/)
43+
- [presentation](https://youtu.be/-pRSWX0shT0) [via YouTube <i class="icon-video"></i>](https://youtube.com)
44+
- [LaTeX source](https://github.com/mmore500/hstrat-recomb-concept/tree/master) [via GitHub <i class="icon-github-1"></i>](https://github.com/)
45+
---

0 commit comments

Comments
 (0)