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Don't perform ICA cleaning on raw data by default when epochs are present #925

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#926
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Don't perform ICA cleaning on raw data by default when epochs are present#925
#926
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hoechenberger
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preprocessing
@hoechenberger

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@hoechenberger
hoechenberger
opened on Apr 17, 2024

I use ICA to clean my epochs. The apply_ica step now (I believe since #899?) cleans the raw data using ICA and adds the results to the report. I don't care for this; I only want to clean my epochs. The cleaned raws clutter my report. Could we change this behavior please?

cc @SophieHerbst

for now I've just commented out this section:

mne-bids-pipeline/mne_bids_pipeline/steps/preprocessing/_08a_apply_ica.py

Lines 275 to 298 in 79e19c1

# Raw
parallel, run_func = parallel_func(
apply_ica_raw, exec_params=config.exec_params
)
logs += parallel(
run_func(
cfg=get_config(
config=config,
subject=subject,
),
exec_params=config.exec_params,
subject=subject,
session=session,
run=run,
task=task,
)
for subject in get_subjects(config)
for session in get_sessions(config)
for run, task in get_runs_tasks(
config=config,
subject=subject,
session=session,
)
)

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