[pre-commit.ci] pre-commit autoupdate (#13559)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: mne[bot] <50266005+mne-bot@users.noreply.github.com>
Co-authored-by: Eric Larson <larson.eric.d@gmail.com>

Author: 3 people

.pre-commit-config.yaml

@@ -1,7 +1,7 @@
 repos:
   # Ruff mne
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.14.9
+    rev: v0.14.10
     hooks:
       - id: ruff-check
         name: ruff lint mne
@@ -82,7 +82,7 @@ repos:
 
   # zizmor
   - repo: https://github.com/woodruffw/zizmor-pre-commit
-    rev: v1.18.0
+    rev: v1.19.0
     hooks:
       - id: zizmor
         args: [--fix]

azure-pipelines.yml

@@ -114,7 +114,7 @@ stages:
           - bash: |
               set -e
               python -m pip install --progress-bar off --upgrade pip
-              python -m pip install --progress-bar off "mne-qt-browser[opengl] @ git+https://github.com/mne-tools/mne-qt-browser.git" pyvista scikit-learn python-picard qtpy nibabel sphinx-gallery "PySide6!=6.8.0,!=6.8.0.1,!=6.8.1.1,!=6.9.1" pandas neo pymatreader antio defusedxml curryreader
+              python -m pip install --progress-bar off "mne-qt-browser[opengl] @ git+https://github.com/mne-tools/mne-qt-browser.git" "git+https://github.com/python-quantities/python-quantities" pyvista scikit-learn python-picard qtpy nibabel sphinx-gallery "PySide6!=6.8.0,!=6.8.0.1,!=6.8.1.1,!=6.9.1" pandas neo pymatreader antio defusedxml curryreader
               python -m pip uninstall -yq mne
               python -m pip install --progress-bar off --upgrade -e . --group=test
             displayName: 'Install dependencies with pip'
@@ -173,7 +173,7 @@ stages:
               python -m pip install --progress-bar off --upgrade pip
               python -m pip install --progress-bar off --upgrade --pre --only-binary=\"numpy,scipy,matplotlib,vtk\" numpy scipy matplotlib vtk
               python -c "import vtk"
-              python -m pip install --progress-bar off --upgrade -ve .[full] --group=test_extra
+              python -m pip install --progress-bar off --upgrade -ve .[full] --group=test_extra "git+https://github.com/python-quantities/python-quantities"
             displayName: 'Install dependencies with pip'
           - bash: |
               set -e

doc/sphinxext/related_software.py

@@ -51,6 +51,11 @@
         "Home-page": "https://users.aalto.fi/~vanvlm1/posthoc/python",
         "Summary": "post-hoc modification of linear models",
     },
+    # https://github.com/freesurfer/surfa/pull/66
+    "surfa": {
+        "Home-page": "https://github.com/freesurfer/surfa",
+        "Summary": "Utilities for medical image and surface processing.",
+    },
     # This package does not provide wheels, so don't force CircleCI to build it.
     # If it eventually provides binary wheels we could add it to
     # `tools/circleci_dependencies.sh` and remove from here.

mne/surface.py

@@ -803,8 +803,15 @@ def query(self, rr):
 
     def _call_pyvista(self, rr):
         pdata = _surface_to_polydata(dict(rr=rr))
-        out = pdata.select_enclosed_points(self.pdata, check_surface=False)
-        return out["SelectedPoints"].astype(bool)
+        # TODO VERSION PyVista 0.47+
+        if hasattr(pdata, "select_interior_points"):
+            meth = pdata.select_interior_points
+            key = "selected_points"
+        else:
+            meth = pdata.select_enclosed_points
+            key = "SelectedPoints"
+        out = meth(self.pdata, check_surface=False)
+        return out[key].astype(bool)
 
     def _call_old(self, rr, n_jobs):
         n_orig = len(rr)

mne/viz/tests/test_3d_mpl.py

@@ -86,7 +86,7 @@ def test_plot_volume_source_estimates_basic(
     want_str = f"({want_p[0]:0.1f}, {want_p[1]:0.1f}, {want_p[2]:0.1f}) mm"
     assert want_str in log, (want_str, init_p)
     for ax_idx in [0, 2, 3, 4]:
-        _fake_click(fig, fig.axes[ax_idx], (0.3, 0.5))
+        _fake_click(fig, fig.axes[ax_idx], (0.5, 0.5))
     _fake_keypress(fig, "left")
     _fake_keypress(fig, "shift+right")
     if bg_img is not None:

tools/azure_dependencies.sh

@@ -2,10 +2,10 @@
 
 set -eo pipefail
 SCRIPT_DIR=$( cd -- "$( dirname -- "${BASH_SOURCE[0]}" )" &> /dev/null && pwd )
-STD_ARGS="--progress-bar off --upgrade"
+STD_ARGS="--progress-bar off --upgrade "
 python -m pip install $STD_ARGS pip setuptools wheel
 if [ "${TEST_MODE}" == "pip" ]; then
-	python -m pip install $STD_ARGS --only-binary="numba,llvmlite,numpy,scipy,vtk,dipy,openmeeg" -e .[full] --group=test
+	python -m pip install $STD_ARGS --only-binary="numba,llvmlite,numpy,scipy,vtk,dipy,openmeeg" -e .[full] --group=test git+https://github.com/python-quantities/python-quantities
 elif [ "${TEST_MODE}" == "pip-pre" ]; then
 	${SCRIPT_DIR}/install_pre_requirements.sh
 	python -m pip install $STD_ARGS --pre -e . --group=test_extra

tools/github_actions_dependencies.sh

@@ -38,6 +38,8 @@ else
 	EXTRAS=""
 fi
 echo ""
+# until quantities releases...
+STD_ARGS="$STD_ARGS git+https://github.com/python-quantities/python-quantities"
 
 echo "::group::Installing test dependencies using pip"
 set -x