specify testpaths in pytest config (#13389)

Co-authored-by: Eric Larson <[email protected]>

Author: drammock

mne/transforms.py

@@ -25,6 +25,7 @@
     _ensure_int,
     _import_nibabel,
     _path_like,
+    _record_warnings,
     _require_version,
     _validate_type,
     check_fname,
@@ -1786,7 +1787,7 @@ def _compute_volume_registration(
 ):
     nib = _import_nibabel("SDR morph")
     _require_version("dipy", "SDR morph", "0.10.1")
-    with np.testing.suppress_warnings():
+    with _record_warnings():
         from dipy.align import (
             affine,
             affine_registration,

pyproject.toml

@@ -265,12 +265,24 @@ module = ['mne.annotations', 'mne.epochs', 'mne.evoked', 'mne.io']
 # -r f (failed), E (error), s (skipped), x (xfail), X (xpassed), w (warnings)
 # don't put in xfail for pytest 8.0+ because then it prints the tracebacks,
 # which look like real errors
-addopts = """--durations=20 --doctest-modules -rfEXs --cov-report= --tb=short \
-    --cov-branch --doctest-ignore-import-errors --junit-xml=junit-results.xml \
-    --ignore=doc --ignore=logo --ignore=examples --ignore=tutorials \
-    --ignore=mne/gui/_*.py --ignore=mne/icons --ignore=tools \
-    --ignore=mne/report/js_and_css \
-    --color=yes --capture=sys"""
+addopts = [
+  "--capture=sys",
+  "--color=yes",
+  "--cov-branch",
+  "--cov-report=",
+  "--doctest-ignore-import-errors",
+  "--doctest-modules",
+  "--durations=20",
+  "--ignore=mne/gui/_*.py",
+  "--ignore=mne/icons",
+  "--ignore=mne/report/js_and_css",
+  "--junit-xml=junit-results.xml",
+  "--tb=short",
+  "-rfEXs",
+]
+testpaths = [
+  "mne",
+]
 
 [tool.rstcheck]
 ignore_directives = [