pin test requirements, trim lower bound on Python version for click

Author: mobiusklein

.github/workflows/debug-wheel-build.yaml

@@ -54,7 +54,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: ['3.9']
+        python-version: ['3.10']
     steps:
       - uses: actions/checkout@v3
       - name: Set up Python ${{ matrix.python-version }}

.github/workflows/mse_tool.yaml

@@ -13,7 +13,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     strategy:
       matrix:
-        python-version: ['3.9']
+        python-version: ['3.11']
         os: [ubuntu-latest, windows-latest]
     steps:
     - uses: actions/checkout@v3

.github/workflows/pythonpublish.yaml

@@ -36,7 +36,7 @@ jobs:
     - name: Build wheels
       run: python -m cibuildwheel --output-dir dist/
       env:
-        CIBW_BUILD: "cp39* cp310* cp311* cp312*"
+        CIBW_BUILD: "cp310* cp311* cp312*"
         CIBW_SKIP: "*_i686 *win32 *musllinux* pp*"
         CIBW_MANYLINUX_X86_64_IMAGE: "manylinux2014"
         CIBW_TEST_REQUIRES: "pytest"

.github/workflows/run-tests.yaml

@@ -11,7 +11,7 @@ jobs:
     strategy:
       matrix:
         os: [ubuntu-latest, windows-latest]
-        python-version: ['3.9', '3.10', '3.11', '3.12']
+        python-version: ['3.10', '3.11', '3.12']
     steps:
     - uses: actions/checkout@v3
     - name: Set up Python ${{ matrix.python-version }}

test-requirements.txt

@@ -8,7 +8,7 @@ ms_peak_picker >= 0.1.41
 brain-isotopic-distribution >= 1.5.8
 dill
 python-idzip >=0.3.2
-click
+click >= 8.2
 h5py
 hdf5plugin
 pyzstd