Fix migration numbering and add migration 010 for package format (#675)

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## Motivation and Context
<!-- Why is this change needed? What problem does it solve? -->
The following PR fixes an issue we introduced on September, 30th that
caused some of the migrations to not apply. This PR fixes it. After
merging we'll have to reset staging as this would not work there (this
is expected).

## How Has This Been Tested?
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tested? -->

## Breaking Changes
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## Types of changes
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the boxes that apply: -->
- [x] Bug fix (non-breaking change which fixes an issue)
- [ ] New feature (non-breaking change which adds functionality)
- [ ] Breaking change (fix or feature that would cause existing
functionality to change)
- [ ] Documentation update

## Checklist
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that apply. -->
- [ ] I have read the [MCP
Documentation](https://modelcontextprotocol.io)
- [ ] My code follows the repository's style guidelines
- [ ] New and existing tests pass locally
- [ ] I have added appropriate error handling
- [ ] I have added or updated documentation as needed

## Additional context
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Signed-off-by: Radoslav Dimitrov <[email protected]>

Author: rdimitrov

.github/workflows/cancel-pulumi-lock.yml

@@ -73,4 +73,4 @@ jobs:
         run: |
           echo "$PULUMI_PROD_PASSPHRASE" > passphrase.prod.txt
           pulumi login gs://mcp-registry-prod-pulumi-state
-          PULUMI_CONFIG_PASSPHRASE_FILE=passphrase.prod.txt pulumi cancel --stack gcpProd --yes
+          PULUMI_CONFIG_PASSPHRASE_FILE=passphrase.prod.txt pulumi cancel --stack gcpProd --yes

…e/migrations/007a_clean_invalid_data.sql …se/migrations/008_clean_invalid_data.sqlinternal/database/migrations/007a_clean_invalid_data.sql renamed to internal/database/migrations/008_clean_invalid_data.sql internal/database/migrations/007a_clean_invalid_data.sql renamed to internal/database/migrations/008_clean_invalid_data.sql

@@ -5,6 +5,8 @@
 -- - Removes package-type-specific forbidden fields (e.g., fileSha256 from non-MCPB packages)
 -- - Ensures all packages have required transport field
 
+BEGIN;
+
 -- Helper function to convert OCI package to canonical reference format
 CREATE OR REPLACE FUNCTION convert_oci_package_to_canonical(pkg jsonb)
 RETURNS jsonb
@@ -197,4 +199,6 @@ DROP FUNCTION IF EXISTS convert_oci_package_to_canonical(jsonb);
 DROP FUNCTION IF EXISTS convert_mcpb_package_to_canonical(jsonb);
 DROP FUNCTION IF EXISTS remove_forbidden_fields(jsonb);
 DROP FUNCTION IF EXISTS ensure_transport_field(jsonb);
-DROP FUNCTION IF EXISTS convert_packages_array(jsonb);
+DROP FUNCTION IF EXISTS convert_packages_array(jsonb);
+
+COMMIT;