get examples running (but failing) in ci

Author: wpbonelli

.gitignore

@@ -1,5 +1,6 @@
 build/
 docs/examples/*.ipynb
+docs/examples/twri/*
 venv/
 .DS_Store
 .ruff_cache

docs/examples/advanced_packages.py

@@ -1,23 +1,22 @@
                                    MODFLOW 6
                 U.S. GEOLOGICAL SURVEY MODULAR HYDROLOGIC MODEL
-                            VERSION 6.6.1 02/10/2025
+                  VERSION 6.7.0.dev3 (preliminary) 10/16/2025
+                               ***DEVELOP MODE***
 
-   MODFLOW 6 compiled Feb 14 2025 13:38:43 with Intel(R) Fortran Intel(R) 64
+   MODFLOW 6 compiled Oct 16 2025 14:05:53 with Intel(R) Fortran Intel(R) 64
    Compiler Classic for applications running on Intel(R) 64, Version 2021.7.0
                              Build 20220726_000000
 
-This software has been approved for release by the U.S. Geological 
-Survey (USGS). Although the software has been subjected to rigorous 
-review, the USGS reserves the right to update the software as needed 
-pursuant to further analysis and review. No warranty, expressed or 
-implied, is made by the USGS or the U.S. Government as to the 
-functionality of the software and related material nor shall the 
-fact of release constitute any such warranty. Furthermore, the 
-software is released on condition that neither the USGS nor the U.S. 
-Government shall be held liable for any damages resulting from its 
-authorized or unauthorized use. Also refer to the USGS Water 
-Resources Software User Rights Notice for complete use, copyright, 
-and distribution information.
+This software is preliminary or provisional and is subject to 
+revision. It is being provided to meet the need for timely best 
+science. The software has not received final approval by the U.S. 
+Geological Survey (USGS). No warranty, expressed or implied, is made 
+by the USGS or the U.S. Government as to the functionality of the 
+software and related material nor shall the fact of release 
+constitute any such warranty. The software is provided on the 
+condition that neither the USGS nor the U.S. Government shall be held 
+liable for any damages resulting from the authorized or unauthorized 
+use of the software.
 
 
 As a work of the United States Government, this USGS product is 
@@ -52,12 +51,15 @@ The following BSD-3 License libraries are used in this USGS product:
       All rights reserved.
       (https://github.com/jacobwilliams/daglib)
 
-MODFLOW 6 compiler options: -Imac/obj_mf6 -O2 -no-heap-arrays -fpe0
--traceback -Qdiag-disable:7416 -Qdiag-disable:7025 -Qdiag-disable:5268 -fpp
--module mac/mod_mf6/ -c -o mac/obj_mf6/compilerversion.o
+MODFLOW 6 compiler options: -Isrc/libmf6_external.a.p -Isrc/libmf6core.a.p
+-Isrc -I../src -warn general -warn truncated_source -stand=f18 -O2 -fpe0
+-no-heap-arrays -traceback -diag-disable:7416 -diag-disable:7025
+-diag-disable:5268 -module src/libmf6core.a.p
+-gen-dep=src/libmf6core.a.p/Utilities_compilerversion.F90.o
+-gen-depformat=make -o src/libmf6core.a.p/Utilities_compilerversion.F90.o -c
 
 System command used to initiate simulation:
-/Users/wbonelli/dev/flopy/.venv/bin/mf6
+mf6
 
 MODFLOW was compiled using uniform precision.
 
@@ -88,42 +90,36 @@ Logical Variables
  FORMAT:FORMATTED              ACCESS:SEQUENTIAL          
  ACTION:READ                
 
- # File generated by Flopy version 3.10.0.dev2 on 04/04/2025 at 09:49:59.
 
- OPENED mymodel.tdis
+ OPENED quickstart.tdis
  FILE TYPE:TDIS6              UNIT 1002   STATUS:OLD                 
  FORMAT:FORMATTED              ACCESS:SEQUENTIAL          
  ACTION:READ                
 
- # File generated by Flopy version 3.10.0.dev2 on 04/04/2025 at 09:49:59.
 
  OPENED mymodel.nam
  FILE TYPE:GWF6               UNIT 1003   STATUS:OLD                 
  FORMAT:FORMATTED              ACCESS:SEQUENTIAL          
  ACTION:READ                
 
- # File generated by Flopy version 3.10.0.dev2 on 04/04/2025 at 09:49:59.
 
  OPENED mymodel.dis
  FILE TYPE:DIS6               UNIT 1004   STATUS:OLD                 
  FORMAT:FORMATTED              ACCESS:SEQUENTIAL          
  ACTION:READ                
 
- # File generated by Flopy version 3.10.0.dev2 on 04/04/2025 at 09:49:59.
 
  OPENED mymodel.npf
  FILE TYPE:NPF6               UNIT 1005   STATUS:OLD                 
  FORMAT:FORMATTED              ACCESS:SEQUENTIAL          
  ACTION:READ                
 
- # File generated by Flopy version 3.10.0.dev2 on 04/04/2025 at 09:49:59.
 
  OPENED mymodel.ic
  FILE TYPE:IC6                UNIT 1006   STATUS:OLD                 
  FORMAT:FORMATTED              ACCESS:SEQUENTIAL          
  ACTION:READ                
 
- # File generated by Flopy version 3.10.0.dev2 on 04/04/2025 at 09:49:59.
 
  OPENED mymodel.oc
  FILE TYPE:OC6       UNIT 1007   STATUS:OLD                 
@@ -132,11 +128,10 @@ Logical Variables
 
 
  OPENED mymodel.chd
- FILE TYPE:CHD6               UNIT 1008   STATUS:OLD                 
+ FILE TYPE:CHD6               UNIT 1009   STATUS:OLD                 
  FORMAT:FORMATTED              ACCESS:SEQUENTIAL          
  ACTION:READ                
 
- # File generated by Flopy version 3.10.0.dev2 on 04/04/2025 at 09:49:59.
 
  READING SIMULATION OPTIONS
     MAXIMUM NUMBER OF ERRORS THAT WILL BE STORED IS 1000
@@ -148,6 +143,7 @@ Logical Variables
  VERSION 1 : 11/13/2014 - INPUT READ FROM MEMPATH: __INPUT__/SIM/TDIS                                
  PROCESSING TDIS OPTIONS
     SIMULATION TIME UNIT IS UNDEFINED
+    SIMULATION STARTING DATE AND TIME IS 1970-01-01T00:00:00           
  END OF TDIS OPTIONS
  PROCESSING TDIS DIMENSIONS
     1 STRESS PERIOD(S) IN SIMULATION
@@ -172,8 +168,8 @@ Logical Variables
 
  Creating solution: SLN_1           
 
- OPENED mymodel.ims
- FILE TYPE:IMS   UNIT 1010   STATUS:OLD                 
+ OPENED solution.ims
+ FILE TYPE:IMS   UNIT 1011   STATUS:OLD                 
  FORMAT:FORMATTED              ACCESS:SEQUENTIAL          
  ACTION:READ                
 
@@ -182,13 +178,20 @@ Logical Variables
 PROCESSING MODEL CONNECTIONS
 
  IMS -- ITERATIVE MODEL SOLUTION PACKAGE, VERSION 6, 4/28/2017
-         INPUT READ FROM UNIT 1010
- # File generated by Flopy version 3.10.0.dev2 on 04/04/2025 at 09:49:59.
+         INPUT READ FROM UNIT 1011
 
  PROCESSING IMS OPTIONS
+ SIMPLE OPTION:
+ DEFAULT SOLVER INPUT VALUES FOR FAST SOLUTIONS
  END OF IMS OPTIONS
+
+ PROCESSING IMS NONLINEAR
+ END OF IMS NONLINEAR DATA
  ***UNDER-RELAXATION WILL NOT BE USED***
 
+
+ PROCESSING LINEAR DATA
+ END OF LINEAR DATA
  ***IMS LINEAR SOLVER WILL BE USED***
 
  IMSLINEAR -- UNSTRUCTURED LINEAR SOLUTION PACKAGE, VERSION 8, 04/28/2017
@@ -227,22 +230,29 @@ PROCESSING MODEL CONNECTIONS
  MULTIPLIER FOR DELT =     1.000
  INITIAL TIME STEP SIZE =   1.000000    
 
+
+ Solution SLN_1 summary
+ ----------------------------------------------------------------------
+ Total formulate time:  .3899999999999737E-04 seconds
+ Total solution time:   .4830000000000043E-03 seconds
+
+
  MEMORY MANAGER TOTAL STORAGE BY DATA TYPE, IN KILOBYTES
  -------------------------------
                     ALLOCATED   
  DATA TYPE           MEMORY     
  -------------------------------
- Character        6.8550000     
+ Character        7.1550000     
  Logical          4.80000000E-02
  Integer          18.988000     
  Real             43.160000     
  -------------------------------
- Total            69.051000     
+ Total            69.351000     
  Virtual          0.0000000     
  -------------------------------
 
 
 
- Run end date and time (yyyy/mm/dd hh:mm:ss): 2025/04/04  9:50:03
- Elapsed run time:  0.057 Seconds
+ Run end date and time (yyyy/mm/dd hh:mm:ss): 2025/11/06 20:09:14
+ Elapsed run time:  0.032 Seconds
  Normal termination of simulation.

docs/examples/quickstart/mfsim.lst

@@ -1,19 +1,16 @@
-# File generated by Flopy version 3.10.0.dev2 on 04/04/2025 at 09:49:59.
-BEGIN options
-END options
+BEGIN TIMING
+ TDIS6 quickstart.tdis tdis
+END TIMING
 
-BEGIN timing
-  TDIS6  mymodel.tdis
-END timing
+BEGIN MODELS
+ GWF6 mymodel.nam mymodel
+END MODELS
 
-BEGIN models
-  gwf6  mymodel.nam  mymodel
-END models
+BEGIN EXCHANGES
 
-BEGIN exchanges
-END exchanges
+END EXCHANGES
 
-BEGIN solutiongroup  1
-  ims6  mymodel.ims  mymodel
-END solutiongroup  1
+BEGIN SOLUTIONGROUP 1
+ ims6 solution.ims mymodel
+END SOLUTIONGROUP 1
 

docs/examples/quickstart/mfsim.nam

@@ -1,13 +1,12 @@
-# File generated by Flopy version 3.10.0.dev2 on 04/04/2025 at 09:49:59.
-BEGIN options
-END options
+BEGIN OPTIONS
+END OPTIONS
 
-BEGIN dimensions
-  MAXBOUND  2
-END dimensions
+BEGIN DIMENSIONS
+ MAXBOUND 2
+END DIMENSIONS
 
-BEGIN period  1
-  1 1 1 1.00000000E+00
-  1 10 10 0.00000000E+00
-END period  1
+BEGIN PERIOD 1
+ 1 1 1 1.0
+ 1 10 10 0.0
+END PERIOD 1
 

docs/examples/quickstart/mymodel.bud

@@ -1,21 +1,24 @@
-# File generated by Flopy version 3.10.0.dev2 on 04/04/2025 at 09:49:59.
-BEGIN options
-END options
+BEGIN OPTIONS
+END OPTIONS
 
-BEGIN dimensions
-  NLAY  1
-  NROW  10
-  NCOL  10
-END dimensions
+BEGIN DIMENSIONS
+ NLAY 1
+ NCOL 10
+ NROW 10
+END DIMENSIONS
 
-BEGIN griddata
-  delr
-    CONSTANT       1.00000000
-  delc
-    CONSTANT       1.00000000
-  top
-    CONSTANT       1.00000000
-  botm
-    CONSTANT       0.00000000
-END griddata
+BEGIN GRIDDATA
+ DELR
+ CONSTANT 1.00000000
+
+ DELC
+ CONSTANT 1.00000000
+
+ TOP
+ CONSTANT 1.00000000
+
+ BOTM
+ CONSTANT 0.00000000
+
+END GRIDDATA
 

docs/examples/quickstart/mymodel.chd

@@ -1,9 +1,9 @@
-# File generated by Flopy version 3.10.0.dev2 on 04/04/2025 at 09:49:59.
-BEGIN options
-END options
+BEGIN OPTIONS
+END OPTIONS
 
-BEGIN griddata
-  strt
-    CONSTANT       1.00000000
-END griddata
+BEGIN GRIDDATA
+ STRT
+ CONSTANT 1.00000000
+
+END GRIDDATA