From 2d669a80672af6e26bb884d2451f418e32404af4 Mon Sep 17 00:00:00 2001
From: w-bonelli <wesbonelli@gmail.com>
Date: Mon, 20 Oct 2025 21:16:54 -0400
Subject: [PATCH] factor out binding module and function in converter, update
 pixi env

---
 flopy4/mf6/binding.py                         |   51 +
 .../mf6/codec/writer/templates/macros.jinja   |    4 +-
 flopy4/mf6/converter.py                       |  114 +-
 pixi.lock                                     | 1667 ++++++++---------
 4 files changed, 873 insertions(+), 963 deletions(-)
 create mode 100644 flopy4/mf6/binding.py

diff --git a/flopy4/mf6/binding.py b/flopy4/mf6/binding.py
new file mode 100644
index 00000000..a3c05fa9
--- /dev/null
+++ b/flopy4/mf6/binding.py
@@ -0,0 +1,51 @@
+from attrs import define
+
+from flopy4.mf6.component import Component
+from flopy4.mf6.exchange import Exchange
+from flopy4.mf6.model import Model
+from flopy4.mf6.package import Package
+from flopy4.mf6.solution import Solution
+
+
+@define
+class Binding:
+    """
+    An MF6 component binding: a record representation of the
+    component for writing to a parent component's name file.
+    """
+
+    type: str
+    fname: str
+    terms: tuple[str, ...] | None = None
+
+    def to_tuple(self) -> tuple[str, ...]:
+        if self.terms and any(self.terms):
+            return (self.type, self.fname, *self.terms)
+        else:
+            return (self.type, self.fname)
+
+    @classmethod
+    def from_component(cls, component: Component) -> "Binding":
+        def _get_binding_type(component: Component) -> str:
+            cls_name = component.__class__.__name__
+            if isinstance(component, Exchange):
+                return f"{'-'.join([cls_name[:2], cls_name[3:]]).upper()}6"
+            elif isinstance(component, Solution):
+                return f"{component.slntype}6"
+            else:
+                return f"{cls_name.upper()}6"
+
+        def _get_binding_terms(component: Component) -> tuple[str, ...] | None:
+            if isinstance(component, Exchange):
+                return (component.exgmnamea, component.exgmnameb)  # type: ignore
+            elif isinstance(component, Solution):
+                return tuple(component.models)
+            elif isinstance(component, (Model, Package)):
+                return (component.name,)  # type: ignore
+            return None
+
+        return cls(
+            type=_get_binding_type(component),
+            fname=component.filename or component.default_filename(),
+            terms=_get_binding_terms(component),
+        )
diff --git a/flopy4/mf6/codec/writer/templates/macros.jinja b/flopy4/mf6/codec/writer/templates/macros.jinja
index f235620f..2c8c5747 100644
--- a/flopy4/mf6/codec/writer/templates/macros.jinja
+++ b/flopy4/mf6/codec/writer/templates/macros.jinja
@@ -9,7 +9,7 @@
 {% elif type == 'array' %}
 {{ array(name, value, how=value|array_how) }}
 {% elif type == 'list' %}
-{{ list(name, value) }}
+{{ list(value) }}
 {% endif %}
 {% endmacro %}
 
@@ -22,7 +22,7 @@
 {{ inset ~ value|join(" ") -}}
 {% endmacro %}
 
-{% macro list(name, value) %}
+{% macro list(value) %}
 {% for row in (value|data2list) %}
 {{ record(row) }}{% if not loop.last %}{{ "\n" }}{% endif %}
 {%- endfor %}
diff --git a/flopy4/mf6/converter.py b/flopy4/mf6/converter.py
index 82956469..f298032d 100644
--- a/flopy4/mf6/converter.py
+++ b/flopy4/mf6/converter.py
@@ -1,4 +1,4 @@
-from collections.abc import Iterable, MutableMapping
+from collections.abc import Iterable, Mapping
 from datetime import datetime
 from pathlib import Path
 from typing import Any
@@ -7,68 +7,20 @@
 import sparse
 import xarray as xr
 import xattree
-from attrs import define
 from cattrs import Converter
 from modflow_devtools.dfn.schema.block import block_sort_key
 from numpy.typing import NDArray
 from xattree import get_xatspec
 
 from flopy4.adapters import get_nn
+from flopy4.mf6.binding import Binding
 from flopy4.mf6.component import Component
 from flopy4.mf6.config import SPARSE_THRESHOLD
 from flopy4.mf6.constants import FILL_DNODATA
 from flopy4.mf6.context import Context
-from flopy4.mf6.exchange import Exchange
-from flopy4.mf6.model import Model
-from flopy4.mf6.package import Package
-from flopy4.mf6.solution import Solution
 from flopy4.mf6.spec import fields_dict
 
 
-@define
-class _Binding:
-    """
-    An MF6 component binding: a record representation of the
-    component for writing to a parent component's name file.
-    """
-
-    type: str
-    fname: str
-    terms: tuple[str, ...] | None = None
-
-    def to_tuple(self):
-        if self.terms and any(self.terms):
-            return (self.type, self.fname, *self.terms)
-        else:
-            return (self.type, self.fname)
-
-    @classmethod
-    def from_component(cls, component: Component) -> "_Binding":
-        def _get_binding_type(component: Component) -> str:
-            cls_name = component.__class__.__name__
-            if isinstance(component, Exchange):
-                return f"{'-'.join([cls_name[:2], cls_name[3:]]).upper()}6"
-            elif isinstance(component, Solution):
-                return f"{component.slntype}6"
-            else:
-                return f"{cls_name.upper()}6"
-
-        def _get_binding_terms(component: Component) -> tuple[str, ...] | None:
-            if isinstance(component, Exchange):
-                return (component.exgmnamea, component.exgmnameb)  # type: ignore
-            elif isinstance(component, Solution):
-                return tuple(component.models)
-            elif isinstance(component, (Model, Package)):
-                return (component.name,)  # type: ignore
-            return None
-
-        return cls(
-            type=_get_binding_type(component),
-            fname=component.filename or component.default_filename(),
-            terms=_get_binding_terms(component),
-        )
-
-
 def _attach_field_metadata(
     dataset: xr.Dataset, component_type: type, field_names: list[str]
 ) -> None:
@@ -88,43 +40,43 @@ def _path_to_tuple(field_name: str, path_value: Path) -> tuple:
     return (field_name.upper(), "FILEOUT", str(path_value))
 
 
-def unstructure_component(value: Component) -> dict[str, Any]:
-    blockspec = dict(sorted(value.dfn.blocks.items(), key=block_sort_key))  # type: ignore
-    blocks: dict[str, dict[str, Any]] = {}
+def get_binding_blocks(value: Component) -> dict[str, dict[str, list[tuple[str, ...]]]]:
+    if not isinstance(value, Context):
+        return {}
+
+    blocks = {}  # type: ignore
     xatspec = xattree.get_xatspec(type(value))
 
-    # Handle child component bindings before converting to dict
-    if isinstance(value, Context):
-        for field_name, child_spec in xatspec.children.items():
-            if hasattr(child_spec, "metadata") and "block" in child_spec.metadata:  # type: ignore
-                block_name = child_spec.metadata["block"]  # type: ignore
-                field_value = getattr(value, field_name, None)
-
-                if block_name not in blocks:
-                    blocks[block_name] = {}
-
-                if isinstance(field_value, Component):
-                    components = [_Binding.from_component(field_value).to_tuple()]
-                elif isinstance(field_value, MutableMapping):
-                    components = [
-                        _Binding.from_component(comp).to_tuple()
-                        for comp in field_value.values()
-                        if comp is not None
-                    ]
-                elif isinstance(field_value, Iterable):
-                    components = [
-                        _Binding.from_component(comp).to_tuple()
-                        for comp in field_value
-                        if comp is not None
-                    ]
-                else:
-                    continue
+    for child_name, child_spec in xatspec.children.items():
+        if (child := getattr(value, child_name, None)) is None:
+            continue
+        if (block_name := child_spec.metadata["block"]) not in blocks:  # type: ignore
+            blocks[block_name] = {}
+        match child:
+            case Component():
+                blocks[block_name][child_name] = [Binding.from_component(child).to_tuple()]
+            case Mapping():
+                blocks[block_name][child_name] = [
+                    Binding.from_component(c).to_tuple() for c in child.values() if c is not None
+                ]
+            case Iterable():
+                blocks[block_name][child_name] = [
+                    Binding.from_component(c).to_tuple() for c in child if c is not None
+                ]
+            case _:
+                raise ValueError(f"Unexpected child type: {type(child)}")
+
+    return blocks
 
-                if components:
-                    blocks[block_name][field_name] = components
 
+def unstructure_component(value: Component) -> dict[str, Any]:
+    blockspec = dict(sorted(value.dfn.blocks.items(), key=block_sort_key))  # type: ignore
+    blocks: dict[str, dict[str, Any]] = {}
+    xatspec = xattree.get_xatspec(type(value))
     data = xattree.asdict(value)
 
+    blocks.update(binding_blocks := get_binding_blocks(value))
+
     for block_name, block in blockspec.items():
         if block_name not in blocks:
             blocks[block_name] = {}
diff --git a/pixi.lock b/pixi.lock
index d821b698..a891a1e8 100644
--- a/pixi.lock
+++ b/pixi.lock
@@ -14,8 +14,8 @@ environments:
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       - conda: https://conda.anaconda.org/conda-forge/linux-64/libexpat-2.7.1-hecca717_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libffi-3.4.6-h2dba641_1.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/libgcc-15.2.0-h767d61c_6.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/libgomp-15.2.0-h767d61c_6.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libgcc-15.2.0-h767d61c_7.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libgomp-15.2.0-h767d61c_7.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/liblzma-5.8.1-hb9d3cd8_2.conda
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@@ -23,7 +23,7 @@ environments:
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-      - conda: https://conda.anaconda.org/conda-forge/linux-64/python-3.13.8-h2b335a9_101_cp313.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/python-3.13.9-h2b335a9_100_cp313.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/python_abi-3.13-8_cp313.conda
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-      - pypi: git+https://github.com/MODFLOW-USGS/modflow-devtools.git#cc9dff57283b92b3f2bc06034bce378e981e9282
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