Merge pull request #259 from RoanKanninga/master

added timesheet to pipeline

Author: Gerbenvandervries

molgenis-compute-core/src/main/resources/templates/slurm/footer_gaf.ftl

@@ -8,6 +8,10 @@ if [ -d ${MC_tmpFolder:-} ];
         rm -r $MC_tmpFolder
 fi
 
+tS=$SECONDS
+tM=$((SECONDS / 60 ))
+tH=$((SECONDS / 3600))
+printf "</#noparse>${taskId}<#noparse>:\t${tS} seconds\t${tM} minutes\t${tH} hours \n" >> Timesheet.txt
 trap - EXIT
 exit 0
 </#noparse>

molgenis-compute-core/src/main/resources/templates/slurm/header_gaf.ftl

@@ -61,3 +61,9 @@ trap "errorExitandCleanUp" HUP INT QUIT TERM EXIT ERR
 MOLGENIS_START=$(date +%s)
 
 touch ${taskId}.sh.started
+if [ -f Timesheet.txt ]
+then
+DATE=`date +%Y-%m-%d`
+	printf "\n\n${DATE}" >> Timesheet.txt
+fi
+SECONDS=0