fwdpy11/pyproject.toml at main · molpopgen/fwdpy11 · GitHub

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[build-system]
# We need setup.cfg support, which setuptools indtroduced in 30.3.0.
requires = [
    "scikit-build-core==0.11.1",
    "setuptools_scm==7.1.0",
    "pybind11[global]==2.12.0",
    "numpy >= 2.0"
]
build-backend = "scikit_build_core.build"

[project]
name = "fwdpy11"
authors = [
    {name = "Kevin R. Thornton", email =  "krthornt@uci.edu"}
]
license = {text = "GNU GPL3+"}
description = "Forward-time population genetic simulation in Python"
readme = {file = "README.rst", content-type = "text/x-rst"}
classifiers = [
    "Intended Audience :: Science/Research",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
    "License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)",
]
dynamic = ["version"]
dependencies = [
    "attrs >= 20.3.0",
    "numpy>=1.23.5",
    "tskit >= 0.5.6",
    "demes ~= 0.2.2",
    "Deprecated",
]
requires-python = ">=3.10, <3.14"

[dependency-groups]
# NOTE: we are doing a very odd hack here!
# uv does NOT currently support locking build dependencies
# so we add it as a dependency group and force it.
# The PROBLEM is that we have TWO places to modify
# things in the future.
build = [
    "scikit-build-core==0.11.1",
    "setuptools_scm==7.1.0",
    "pybind11[global]==2.12.0",
    "numpy >= 2.0"
]
format = [
    "black==24.10.0"
]
lint = [
    "flake8",
    "flake8-bugbear",
]
msprime = [
    "msprime"
]
dev = [
#below are for building package
#and running tests
    "pytest",
    "pytest-xdist",
    "hypothesis",
    "build",
    "twine",
    {include-group = "msprime"}
]

doc = [
    "jupyter-book>=1",
    "pydata-sphinx-theme",
    "matplotlib",
    "pandas",
# pyarrow will be a requirement of pandas soon.
# right now, not having it raises a warning
    "pyarrow",
    "sphinx-issues",
    "demesdraw~=0.4.0",
    {include-group = "msprime"},
]

[project.scripts]
fwdpy11 = "fwdpy11.__main__:main"

[project.urls]
Repository = "https://github.com/molpopgen/fwdpy11"
Issues = "https://github.com/molpopgen/fwdpy11/issues"
Documentation = "https://molpopgen.github.io/fwdpy11"

[tool.scikit-build]
metadata.version.provider = "scikit_build_core.metadata.setuptools_scm"
sdist.include = ["fwdpy11/_version.py"]
sdist.exclude = [".github", "fwdpy11/headers/fwdpp/subprojects"]

[tool.setuptools_scm]
write_to = "fwdpy11/_version.py"

[tool.pytest.ini_options]
filterwarnings = [
    "error",
]

[tool.cibuildwheel]
environment="PATH=$PATH:/$HOME/.cargo/bin LD_LIBRARY_PATH=fwdpy11"
test-command = "pytest {project}/tests"
test-requires = "pytest msprime hypothesis"
build-frontend = "build"

[tool.cibuildwheel.macos]
build = "cp3{12,13}-*"
before-all = "./deployment/macos_wheels/install_gsl.sh"

[tool.cibuildwheel.linux]
build = "cp*manylinux*"
manylinux-x86_64-image = "manylinux_2_28"
before-all = "./deployment/linux_wheels/cibuildwheel.sh"
archs = "x86_64"
# skip = "pp* *musllinux*"

[tool.uv]
required-environments = [
    "sys_platform == 'darwin' and implementation_name == 'cpython'",
    "sys_platform == 'linux' and implementation_name == 'cpython'",
]