Adds support for local files, resolves #1

Author: a-r-j

CHANGELOG.md

@@ -2,8 +2,12 @@
 
 All notable changes to the "protein-viewer" extension will be documented in this file.
 
-Check [Keep a Changelog](http://keepachangelog.com/) for recommendations on how to structure this file.
+## 1.0.1
 
-## [Unreleased]
+* Adds Right-click open from context menu
+* Enables opening of multiple panels
+* Adds PDB name to panel
 
-- Initial release
+## 1.0.0
+
+Initial release!

LICENSE

@@ -0,0 +1,21 @@
+The MIT License
+
+    Copyright (c) 2017 - now, Arian Jamasb
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in
+all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+THE SOFTWARE.

README.md

@@ -1,13 +1,29 @@
-<img src="img/logo.png" alt="drawing" width="200"/>
-
 # VSCoding-Sequence
 
+<img src="img/logo.png" alt="drawing" width="200"/>
+
 VSCoding Sequence allows for visualisation of protein structures in the editor, courtesy of the fantastic [Mol*](https://molstar.org/)
 
 ## Features
-![](img/usage.gif)
 
-Simply call the Start Protein Viewer command, enter a PDB accession code & away you go!
+### Loading a Structure from the PDB
+
+![Usage gif](img/usage.gif)
+
+Simply call the `Start Protein Viewer command`, enter a PDB accession code & away you go!
+
+### Loading a Local File
+
+![Local file usage gif](img/local_file.gif)
+
+Right-click on the `.pdb` file in the file editor and select `Launch Protein Viewer from File`
+
+### 1.0.1
+
+* Adds Right-click open from context menu
+* Enables opening of multiple panels
+* Adds PDB name to panel
+
 ### 1.0.0
 
 Initial release!

img/local_file.gif

@@ -2,25 +2,49 @@
   "name": "protein-viewer",
   "displayName": "Protein Viewer",
   "description": "",
-  "version": "0.0.1",
+  "version": "0.0.2",
+  "publisher": "ArianJamasb",
+  "author": {
+    "name": "Arian Jamasb"
+  },
+  "icon": "img/logo.png",
   "engines": {
     "vscode": "^1.62.0"
   },
+  "repository": {
+    "type": "git",
+    "url": "https://github.com/a-r-j/vscoding-sequence.git"
+  },
+  "license": "MIT",
   "categories": [
-    "Other"
+    "Other",
+    "Visualization",
+    "Data Science"
   ],
   "activationEvents": [
-    "onCommand:protein-viewer.start"
+    "onCommand:protein-viewer.start",
+    "onCommand:protein-viewer.activateFromFile"
   ],
   "main": "./out/extension.js",
   "contributes": {
     "commands": [
       {
         "command": "protein-viewer.start",
         "title": "Start Protein Viewer"
+      },
+      {
+        "command": "protein-viewer.activateFromFile",
+        "title": "Launch Protein Viewer from File"
       }
-    ]
-  },
+    ],
+    "menus": {
+      "explorer/context": [{
+          "when": "resourceExtname == .pdb",
+          "command": "protein-viewer.activateFromFile",
+          "group": "navigation"
+      }]
+  }
+},
   "scripts": {
     "vscode:prepublish": "npm run compile",
     "compile": "tsc -p ./",

out/extension.js

@@ -2,16 +2,25 @@
 // Import the module and reference it with the alias vscode in your code below
 import * as vscode from 'vscode';
 import { ProteinViewerPanel } from "./panels/ProteinViewerPanel";
+import * as fs from 'fs';
 
 export function activate(context: vscode.ExtensionContext) {
+
 	const helloCommand = vscode.commands.registerCommand("protein-viewer.start", () => {
 		showInputBox().then((accession) => {
 			console.log(accession);
 			ProteinViewerPanel.render(context.extensionUri, accession);
 		});
 	});
+
+	const activateFromFile = vscode.commands.registerCommand("protein-viewer.activateFromFile", (file_uri: vscode.Uri)  => {
+		ProteinViewerPanel.renderFromFile(context.extensionUri, file_uri);
+	});
+
+	//context.subscriptions.push(...[helloCommand, activateFromFile]);
 	context.subscriptions.push(helloCommand);
-	}
+	context.subscriptions.push(activateFromFile);
+}
 
 // this method is called when your extension is deactivated
 // export function deactivate() {}
@@ -22,4 +31,4 @@ async function showInputBox() {
 		placeHolder: 'Enter a PDB accession',
 	});
 	return accession;
-}
+}