CaDrA/_pkgdown.yml at master · montilab/CaDrA · GitHub

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url: https://github.com/montilab/CaDrA/

development:
  mode: auto

template:
  params:
    bootswatch: cosmo

authors:
  Reina Chau:
    href: https://github.com/RC-88
  Stefano Monti:
    href: https://github.com/tetomonti
  Katia Bulekova:
    href: https://github.com/katgit
  Vinay Kartha:
    href: https://github.com/vkartha

news:
  one_page: false

reference:
- title: Workflow Methods
  desc: ~
  contents:
  - '`CaDrA`'
  - '`candidate_search`'
  - '`calc_rowscore`'
  - '`topn_best`'
  - '`prefilter_data`'
  - '`generate_permutations`'

- title: Plot Methods
  desc: ~
  contents:
  - '`meta_plot`'
  - '`topn_plot`'
  - '`permutation_plot`'

- title: Data Objects
  desc: ~
  contents:
  - '`sim_FS`'
  - '`sim_Scores`'
  - '`topn_list`'
  - '`perm_res`'
  - '`CCLE_MUT_SCNA`'
  - '`CTNBB1_reporter`'
  - '`BRCA_GISTIC_MUT_SIG`'
  - '`TAZYAP_BRCA_ACTIVITY`'

navbar:
  title: "CaDrA"
  left:
    - icon: fa-home
      href: index.html
    - text: "Documentation"
      menu:
      - text: "Scoring Functions"
        href: articles/scoring_functions.html
      - text: "Permutation-Based Testing"
        href: articles/permutation_based_testing.html
      - text: "How to run CaDrA within a Docker Environment"
        href: articles/docker.html
    - text: "Reference"
      href: reference/index.html
  right:
    - text: "Change Log"
      href: news/index.html
    - icon: fa-github
      href: https://github.com/montilab/CaDrA