Question about p-values in result_summary.tsv

[ikaufhold]

Hello!

Thank you for developing this great tool!

I would like to extract gene families that contracted or expanded significantly at a specific node from the result_summary.tsv file.

If I understood your description of the output correctly, then result_summary.tsv already contains only gene families with significant changes.
However, many of the p-values are substantially higher than 0.05. How were these p-values calculated, and what do they refer to?

Best regards!