0.6.10 patch

OJWatson · OJWatson · commit deb113e152e6 · 2021-10-22T13:31:30.000+01:00
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: squire
 Type: Package
 Title: SEIR transmission model of COVID-19
-Version: 0.6.9
+Version: 0.6.10
 Authors@R: c(
   person("OJ", "Watson", email = "o.watson15@imperial.ac.uk", role = c("aut", "cre")),
   person("Patrick", "Walker", email = "patrick.walker06@imperial.ac.uk", role = c("aut")),
diff --git a/NEWS.md b/NEWS.md
@@ -1,3 +1,7 @@
+# squire 0.6.10
+
+* `sample_pmcmc` bug fix dor negative posterior checks incorrectly. 
+
 # squire 0.6.9
 
 * `atol` and `rtol` can be passed to `pmcmc` fitting as named arguments in 
diff --git a/tests/testthat/test-js.R b/tests/testthat/test-js.R
@@ -63,7 +63,7 @@ test_that("js and R versions agree for basic model", {
     time_period = 365,
     hosp_bed_capacity = 100000,
     ICU_bed_capacity = 1000000,
-    mod_gen = gen_js,
+    mod_gen = gen_js$new,
     init = init
   )
 

Original file line number	Diff line number	Diff line change
`@@ -63,7 +63,7 @@ test_that("js and R versions agree for basic model", {`
`63`	`63`	`time_period = 365,`
`64`	`64`	`hosp_bed_capacity = 100000,`
`65`	`65`	`ICU_bed_capacity = 1000000,`
`66`		`- mod_gen = gen_js,`
	`66`	`+ mod_gen = gen_js$new,`
`67`	`67`	`init = init`
`68`	`68`	`)`
`69`	`69`