Merge pull request #68 from ao508/remove-microbiome-enums

Commented out microbiome defs

Author: ao508

src/main/java/org/mskcc/smile/commons/enums/CmoSampleClass.java

@@ -15,8 +15,8 @@ public enum CmoSampleClass {
     PRIMARY("Primary"),
     RECURRENCE("Recurrence"),
     TUMOR("Tumor"),
-    UNKNOWN_TUMOR("Unknown Tumor"),
-    MICROBIOME("Microbiome");
+    UNKNOWN_TUMOR("Unknown Tumor");
+    // MICROBIOME("Microbiome");
 
     private static final Map<String, CmoSampleClass> valueToCmoSampleClass = new HashMap<>();
 

src/main/java/org/mskcc/smile/commons/enums/SampleOrigin.java

@@ -30,8 +30,8 @@ public enum SampleOrigin {
     TISSUE("Tissue"),
     URINE("Urine"),
     VIABLY_FROZEN_CELLS("Viably Frozen Cells"),
-    WHOLE_BLOOD("Whole Blood"),
-    STOOL("Stool");
+    WHOLE_BLOOD("Whole Blood");
+    // STOOL("Stool");
 
     private static final Map<String, SampleOrigin> valueToSampleOrigin = new HashMap<>();
 

src/main/java/org/mskcc/smile/commons/enums/SampleType.java

@@ -31,8 +31,8 @@ public enum SampleType {
     SLIDES("Slides"),
     TISSUE("Tissue"),
     UHMWDNA("uhmwDNA"),
-    WHOLE_BLOOD("Whole Blood"),
-    STOOL("Stool");
+    WHOLE_BLOOD("Whole Blood");
+    //STOOL("Stool");
 
     private static final Map<String, SampleType> valueToSampleType = new HashMap<>();