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Installation

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Laurent Thomas edited this page Apr 26, 2019 · 7 revisions

In Fiji

  • Activate the IJ-OpenCV update site and the Multi-Template Matching update site (Help>Update...>Manage update sites)
  • The Plugins will be available in Plugins>Multi-Template Matching

Alternatively a pre-configured zipped Fiji installation is archived on Zenodo.
DOI
Just unzip the file and launch the .exe file.

NB:

  • cp0 character encoding exception -> It does not prevent the execution of the plugins but see section Issues to fix it.
  • The plugins do not work with ImageJ 1.52n due to a bug in ImageJ (fixed in ImageJ 1.52o)

In Knime

Install the following extensions in Knime :

  • Knime image processing
  • Knime image processing - Python extension
  • Knime python integration

Set up a new pre-configured python environment in Anaconda using the dependency file (see the code tab).
To do so, once anaconda installed, open the anaconda prompt in the folder containing the environment file and type
conda env create -f environment.yml

Then set the python environment in KNIME
File>Preferences>KNIME>Python
and paste the path to the python.exe usually in C:\SomePath\Anaconda\envs\KNIME-TemplateMatching

Finally download and open the workflow file Multi-Template matching

Alternatively a pre-configured KNIME installation and Anaconda environment are archived on Zenodo.
DOI
Just unzip the KNIME.zip to have a functional KNIME installation. It is still needed to set the python environment in KNIME.

Similarly unzip the archived environment in a new subfolder of C:\SomePath\Anaconda\envs\.

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