The format is based on Keep a Changelog and this project adheres to Semantic Versioning.
- #23 - Pipeline sync to the latest nf-core template version 3.2.0
- #22 - Added
workflow diagramand comprehensive documentation- Added detailed usage instructions and example configurations
- Included complete pipeline description with all modules
- #17 - Updated test data sheet
- #13 - Extended main workflow for binning
- #11 - Added
MetaBAT2&jgi_summarize_bam_contig_depthmodules - #8 - Extended main workflow upto Alignment and mapping
- #7 - Implemented main workflow upto MEGAHIT
- #6 - Implemented fastp adapter trimming and quality filtering
- #21 - Modified fastp module logic for improved preprocessing
- #17 - Enhanced SAMtools workflow for more efficient BAM processing
- #16 - Restructured project directories for better organization
- #11 -
Updated modules+list of MEGAHIT k-mers+subworkflows - #9 - Updated the
publish.dir&ext.argsof the modules - #7 - Optimized MEGAHIT parameters for metagenomic assembly
- #22 - Resolved issues with transparent workflow images in documentation
- #17 - Debugged Binning subworkflow
- #16 - Fixed Pipeline sync + pre-commit errors
- #13 - Resolved issues with GitHub Actions + Lint failures
- #9 - Bug fixes in I/O channelization in main workflow
- #22 - Updated docs
README.md,output.mdandusage.md - #16 - Updated README.md
- #7 - Added ASCII art in nextflow.config
- #6 - Added module output documentation
- #5 - Integrated samtools for indexing.
- Updated CHANGELOG.md file with versioned entries for tracking purpose.
- Updated CITATIONS.md file for proper citations.
- #1 - Integrated samtools for
- Tested branching strategies (By setting up dev branch).
- Added BWA modules: index and mem for sequence alignment.
- Integrated megahit module for metagenome assembly.
- Added fastp module for reads preprocessing.
Initial release of MDL/metabolt, created with the nf-core template.
- Initial template setup from nf-core/tools, version 3.0.2.