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Description
Hi,
I input the tsv file from STAR fusion on Linux server but it is not working. The slurm output shows:
assert line[4] == 'LeftGene', 'Unrecognized STAR-Fusion input'
AssertionError: Unrecognized STAR-Fusion input
Then I tried uploading the tsv file to the webapp, it pops up input errors:
Line 1: does not have enough columns. Expected at least: 4.
Line 2: 5' gene junction must be an integer: HISEQ2000-03:523:C5HJFACXX:6:2104:17156:8138;
Line 3: 5' gene junction must be an integer: HISEQ2000-05:462:C5HJ6ACXX:8:2108:10586:9477;
Line 4: 5' gene junction must be an integer: HISEQ2500-02:564:C5HJLACXX:8:2107:15460:6701;
Line 5: 5' gene junction must be an integer: HISEQ2000-05:462:C5HJ6ACXX:8:1305:12805:25454;
...
Here is my script:
agfusion batch
-f star-fusion.fusion_predictions.abridged.tsv
-a starfusion
-db /mnt/beegfs/hassan/Resources/agfusion.homo_sapiens.87.db
-o AGFusion_out
--middlestar
--noncanonical
Are these errors caused by an incompatibility of files or versions?
Thank you.
-q