The cellorganizer-python project strives to be a Python 3 package to manage the binaries used in CellOrganizer for Docker and CellOrganizer for Singularity.
Supported methods are
img2slml(dim, dna, cell, protein, options)image2SPHARMparameterization()slml2img(filenames, options)slml2info(filenames, options)slml2slml(files, options)slml2report(model1_filename, model2_filename)imshow(img_path, options)download_latest_notebooks()get_image_collection()get(filename, feature)ometiff2array(filename)ometiff2projection(filename, options={})tiff2ometiff(input_filename, output_filename, options={})img2ometiff(arr_img, filename, options={})xmlvalid(filename)tiffcomment(filename)xmlindent(filename)showinf(filename, **kwargs)
When contributing to this repository, please first discuss the change you wish to make via issue, email, or any other method with the owners of this repository before making a change.
On this repository, we will follow Google's Style Guide for Python.
Support for CellOrganizer has been provided by grants GM075205, GM090033 and GM103712 from the National Institute of General Medical Sciences, grants MCB1121919 and MCB1121793 from the U.S. National Science Foundation, by a Forschungspreis from the Alexander von Humboldt Foundation, and by the Freiburg Institute for Advanced Studies.
Copyright (c) 2007-2020 by the Murphy Lab at the Computational Biology Department in Carnegie Mellon University