diff --git a/build.sh b/build.sh index a9d24fe..23b1369 100755 --- a/build.sh +++ b/build.sh @@ -19,4 +19,4 @@ rm cellorganizer-binaries.tgz #docker build --no-cache -t icaoberg/cellorganizer-jupyter:latest . docker build -t murphylab/cellorganizer-jupyter:latest . -docker tag murphylab/cellorganizer-jupyter:latest murphylab/cellorganizer-jupyter:v2.9.0 +docker tag murphylab/cellorganizer-jupyter:latest murphylab/cellorganizer-jupyter:v2.9.1 diff --git a/files/Download_files.ipynb b/files/Download_files.ipynb index 595a4b6..1023ac9 100644 --- a/files/Download_files.ipynb +++ b/files/Download_files.ipynb @@ -5,7 +5,29 @@ "metadata": {}, "source": [ "# Download files from the CellOrganizer site\n", - "Run this notebook to download files associated with this CellOrganizer release." + "Run this notebook to download files associated with this CellOrganizer release.\n", + "\n", + "Here are a quick guide for using various nethods from cellorganizer\n", + "\n", + "\n", + "\n", + "#### img2slml( dimensionality, dnaImagesDirectoryPath, cellImagesDirectoryPath,protienImagesDirectoryPath , options)\n", + "\n", + "#### slml2info([model file],options)\n", + "\n", + "#### slml2report(model_file1 , model_file2, options)\n", + "\n", + "#### slml2img([model file], options)\n", + "\n", + "All files require full qualified path for them.\n", + "options are model or method specific dictionary, refer to given demos to understand how they work.\n", + "\n", + "Refer the http://www.cellorganizer.org/ website for more details." ] }, { @@ -56,4 +78,4 @@ }, "nbformat": 4, "nbformat_minor": 2 -} +} \ No newline at end of file diff --git a/push.sh b/push.sh index b621673..1163e4e 100755 --- a/push.sh +++ b/push.sh @@ -1,4 +1,4 @@ !/bin/bash docker push murphylab/cellorganizer-jupyter:latest -docker push murphylab/cellorganizer-jupyter:v2.9.0 +docker push murphylab/cellorganizer-jupyter:v2.9.1