mini_assemble core dump #40
Description
Hi, I've tried to run several versions of pomoxis (the info is from v. 0.3.2), on a linux compute cluster in an sbatch script. The command I use is: mini_assemble -i $READS -t 30. Any thoughts on what might be going wrong?
The output files are:
total 10485624
20 Feb 20 16:38 racon_1_1.fa.gz
10701156352 Feb 20 16:38 core.57211
123399808 Feb 20 16:30 reads2contigs_1_1.paf.gz
56765084 Feb 20 16:28 reads.gfa.fa.gz
2182392876 Feb 20 15:29 reads.fa.gz
Everything seems to run fine, then I get this info before the error:
[M::main] CMD: minimap2 -K 500M -t 30 reads.gfa.fa.gz reads.fa.gz
[M::main] Real time: 137.471 sec; CPU: 2542.682 sec; Peak RSS: 2.415 GB
[racon::Polisher::initialize] loaded target sequences 3.306026 s
[racon::Polisher::initialize] loaded sequences 126.045216 s
[racon::Polisher::initialize] loaded overlaps 11.698260 s
[racon::Polisher::initialize] aligning overlaps [=====> ] 66.562001 s
[racon::Polisher::initialize] aligning overlaps [==========> ] 109.589898 s
[racon::Polisher::initialize] aligning overlaps [================> ] 150.993377 s
[racon::Polisher::initialize] aligning overlaps [====================] 192.331360 s
[racon::Polisher::initialize] transformed data into windows 6.027842 s
/apps/pomoxis/0.3.2/bin/mini_assemble: line 206: 57211 Illegal instruction (core dumped) racon ${BASERACON
OPTS} ${ADDRACONOPTS} -w ${MOD_WINDOW_LEN} -t ${THREADS} -q -1 ${SHUFREADS} ${READS2TIGS} ${SCAFFOLD}
57212 Done | gzip -1 > ${NEWSCAF}