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lines changed Original file line number Diff line number Diff line change @@ -96,7 +96,7 @@ Once complete, a `singularity` folder containing the Singularity images will be
9696# Set R library path to current working directory
9797export R_LIBS_USER=$( pwd) /R_libs
9898# Create the specified R library path if it doesn't already exist
99- mkdir -p $R_LIBS
99+ mkdir -p $R_LIBS_USER
100100
101101# Set Singularity cache directory
102102export SINGULARITY_CACHEDIR=$( pwd) /singularity
@@ -217,6 +217,11 @@ If the reference table does not specify an annotations database for the target o
217217``` bash
218218# Set R library path if not already set
219219export R_LIBS_USER=$( pwd) /R_libs
220+ # Create the specified R library path if it doesn't already exist
221+ mkdir -p $R_LIBS_USER
222+
223+ # Set Singularity cache directory if not already set
224+ export SINGULARITY_CACHEDIR=$( pwd) /singularity
220225
221226singularity exec \
222227 --bind $( pwd) :$( pwd) \
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