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‎environment.yml‎

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name: medcalc-bench-final
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channels:
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- defaults
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- pytorch
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dependencies:
6-
- bzip2=1.0.8=h6c40b1e_5
7-
- ca-certificates=2024.3.11=hecd8cb5_0
8-
- expat=2.6.2=hcec6c5f_0
9-
- libcxx=14.0.6=h9765a3e_0
10-
- libffi=3.4.4=hecd8cb5_0
11-
- ncurses=6.4=hcec6c5f_0
12-
- openssl=3.0.13=hca72f7f_0
13-
- python=3.12.3=hd58486a_0
14-
- readline=8.2=hca72f7f_0
15-
- sqlite=3.41.2=h6c40b1e_0
16-
- tk=8.6.12=h5d9f67b_0
17-
- xz=5.4.6=h6c40b1e_0
18-
- zlib=1.2.13=h4dc903c_0
19-
- pip=23.3.1
20-
- pytorch==2.3.0
21-
- pip:
22-
- aiofiles==23.2.1
23-
- aiohttp==3.9.5
24-
- aiosignal==1.3.1
25-
- annotated-types==0.6.0
26-
- anyio==4.3.0
27-
- appnope==0.1.4
28-
- argon2-cffi==23.1.0
29-
- argon2-cffi-bindings==21.2.0
30-
- argparse==1.4.0
31-
- arrow==1.3.0
32-
- asttokens==2.4.1
33-
- async-lru==2.0.4
34-
- asyncio==3.4.3
35-
- attrs==23.2.0
36-
- babel==2.14.0
37-
- beautifulsoup4==4.12.3
38-
- bleach==6.1.0
39-
- certifi==2024.2.2
40-
- cffi==1.16.0
41-
- charset-normalizer==3.3.2
42-
- click==8.1.7
43-
- colorlog==6.8.2
44-
- comm==0.2.2
45-
- contourpy==1.2.1
46-
- cycler==0.12.1
47-
- dataclasses==0.6
48-
- datasets==2.19.2
49-
- debugpy==1.8.1
50-
- decorator==5.1.1
51-
- defusedxml==0.7.1
52-
- dill==0.3.8
53-
- distro==1.9.0
54-
- et-xmlfile==1.1.0
55-
- eval-type-backport==0.2.0
56-
- executing==2.0.1
57-
- fastjsonschema==2.19.1
58-
- filelock==3.14.0
59-
- fonttools==4.51.0
60-
- fqdn==1.5.1
61-
- frozenlist==1.4.1
62-
- fsspec==2024.3.1
63-
- h11==0.14.0
64-
- httpcore==1.0.5
65-
- httpx==0.27.0
66-
- huggingface-hub==0.23.3
67-
- idna==3.7
68-
- ipykernel==6.29.4
69-
- ipython==8.23.0
70-
- ipywidgets==8.1.2
71-
- isoduration==20.11.0
72-
- jedi==0.19.1
73-
- jinja2==3.1.3
74-
- joblib==1.4.2
75-
- json5==0.9.25
76-
- jsonpointer==2.4
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- jsonschema==4.21.1
78-
- jsonschema-specifications==2023.12.1
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- jupyter==1.0.0
80-
- jupyter-client==8.6.1
81-
- jupyter-console==6.6.3
82-
- jupyter-core==5.7.2
83-
- jupyter-events==0.10.0
84-
- jupyter-lsp==2.2.5
85-
- jupyter-server==2.14.0
86-
- jupyter-server-terminals==0.5.3
87-
- jupyterlab==4.1.6
88-
- jupyterlab-pygments==0.3.0
89-
- jupyterlab-server==2.26.0
90-
- jupyterlab-widgets==3.0.10
91-
- kiwisolver==1.4.5
92-
- lab==8.1
93-
- markdown-it-py==3.0.0
94-
- markupsafe==2.1.5
95-
- matplotlib==3.8.4
96-
- matplotlib-inline==0.1.7
97-
- mdurl==0.1.2
98-
- mistune==3.0.2
99-
- multidict==6.0.5
100-
- multiprocess==0.70.16
101-
- nbclient==0.10.0
102-
- nbconvert==7.16.3
103-
- nbformat==5.10.4
104-
- nest-asyncio==1.6.0
105-
- nltk==3.8.1
106-
- notebook==7.1.3
107-
- notebook-shim==0.2.4
108-
- numpy==1.26.4
109-
- openai==0.28
110-
- openai-parallel-toolkit==0.5.1
111-
- openpyxl==3.1.2
112-
- overrides==7.7.0
113-
- packaging==24.0
114-
- pandas==2.2.2
115-
- pandocfilters==1.5.1
116-
- parso==0.8.4
117-
- pexpect==4.9.0
118-
- pillow==10.3.0
119-
- pip==23.3.1
120-
- platformdirs==4.2.0
121-
- prometheus-client==0.20.0
122-
- prompt-toolkit==3.0.43
123-
- psutil==5.9.8
124-
- ptyprocess==0.7.0
125-
- pure-eval==0.2.2
126-
- pyarrow==16.1.0
127-
- pyarrow-hotfix==0.6
128-
- pycparser==2.22
129-
- pydantic==2.7.0
130-
- pydantic-core==2.18.1
131-
- pygments==2.17.2
132-
- pyparsing==3.1.2
133-
- python-dateutil==2.9.0.post0
134-
- python-json-logger==2.0.7
135-
- pytz==2024.1
136-
- pyyaml==6.0.1
137-
- pyzmq==26.0.2
138-
- qtconsole==5.5.1
139-
- qtpy==2.4.1
140-
- referencing==0.34.0
141-
- regex==2024.4.28
142-
- requests==2.32.3
143-
- rfc3339-validator==0.1.4
144-
- rfc3986-validator==0.1.1
145-
- rich==13.7.1
146-
- rpds-py==0.18.0
147-
- send2trash==1.8.3
148-
- setuptools==68.2.2
149-
- shellingham==1.5.4
150-
- simplejson==3.19.2
151-
- six==1.16.0
152-
- sniffio==1.3.1
153-
- soupsieve==2.5
154-
- stack-data==0.6.3
155-
- tabulate==0.9.0
156-
- terminado==0.18.1
157-
- tiktoken==0.6.0
158-
- tinycss2==1.2.1
159-
- together==1.2.0
160-
- tornado==6.4
161-
- tqdm==4.66.2
162-
- traitlets==5.14.3
163-
- transformers==4.30.0
164-
- txt2tags==3.9
165-
- typer==0.12.3
166-
- types-python-dateutil==2.9.0.20240316
167-
- typing-extensions==4.11.0
168-
- tzdata==2024.1
169-
- uri-template==1.3.0
170-
- urllib3==2.2.1
171-
- wcwidth==0.2.13
172-
- webcolors==1.13
173-
- webencodings==0.5.1
174-
- websocket-client==1.7.0
175-
- wheel==0.41.2
176-
- widgetsnbextension==4.0.10
177-
- xxhash==3.4.1
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- yarl==1.9.4
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prefix: /opt/anaconda3/envs/medcalc-bench

‎evaluation/environment.yml‎

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name: medcalc-bench-final
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channels:
3+
- defaults
4+
dependencies:
5+
- blas=1.0=openblas
6+
- bzip2=1.0.8=h6c40b1e_5
7+
- ca-certificates=2024.3.11=hecd8cb5_0
8+
- expat=2.6.2=hcec6c5f_0
9+
- libcxx=14.0.6=h9765a3e_0
10+
- libffi=3.4.4=hecd8cb5_0
11+
- libgfortran=5.0.0=11_3_0_hecd8cb5_28
12+
- libgfortran5=11.3.0=h9dfd629_28
13+
- libopenblas=0.3.21=h54e7dc3_0
14+
- libprotobuf=3.20.3=hfff2838_0
15+
- llvm-openmp=14.0.6=h0dcd299_0
16+
- ncurses=6.4=hcec6c5f_0
17+
- numpy-base=1.26.4=py312hbb3573c_0
18+
- openssl=3.0.13=hca72f7f_0
19+
- python=3.12.3=hd58486a_0
20+
- pytorch=2.3.0=cpu_py312h9d484b6_0
21+
- readline=8.2=hca72f7f_0
22+
- sqlite=3.41.2=h6c40b1e_0
23+
- tk=8.6.12=h5d9f67b_0
24+
- typing_extensions=4.11.0=py312hecd8cb5_0
25+
- xz=5.4.6=h6c40b1e_0
26+
- zlib=1.2.13=h4dc903c_0
27+
- pip:
28+
- accelerate==0.31.0
29+
- aiofiles==23.2.1
30+
- aiohttp==3.9.5
31+
- aiosignal==1.3.1
32+
- annotated-types==0.6.0
33+
- anyio==4.3.0
34+
- appnope==0.1.4
35+
- argon2-cffi==23.1.0
36+
- argon2-cffi-bindings==21.2.0
37+
- argparse==1.4.0
38+
- arrow==1.3.0
39+
- asttokens==2.4.1
40+
- async-lru==2.0.4
41+
- asyncio==3.4.3
42+
- attrs==23.2.0
43+
- babel==2.14.0
44+
- beautifulsoup4==4.12.3
45+
- bleach==6.1.0
46+
- certifi==2024.2.2
47+
- cffi==1.16.0
48+
- charset-normalizer==3.3.2
49+
- click==8.1.7
50+
- colorlog==6.8.2
51+
- comm==0.2.2
52+
- contourpy==1.2.1
53+
- cycler==0.12.1
54+
- dataclasses==0.6
55+
- datasets==2.19.2
56+
- debugpy==1.8.1
57+
- decorator==5.1.1
58+
- defusedxml==0.7.1
59+
- dill==0.3.8
60+
- distro==1.9.0
61+
- et-xmlfile==1.1.0
62+
- eval-type-backport==0.2.0
63+
- executing==2.0.1
64+
- fastjsonschema==2.19.1
65+
- filelock==3.14.0
66+
- fonttools==4.51.0
67+
- fqdn==1.5.1
68+
- frozenlist==1.4.1
69+
- fsspec==2024.3.1
70+
- h11==0.14.0
71+
- httpcore==1.0.5
72+
- httpx==0.27.0
73+
- huggingface-hub==0.23.3
74+
- idna==3.7
75+
- ipykernel==6.29.4
76+
- ipython==8.23.0
77+
- ipywidgets==8.1.2
78+
- isoduration==20.11.0
79+
- jedi==0.19.1
80+
- jinja2==3.1.3
81+
- joblib==1.4.2
82+
- json5==0.9.25
83+
- jsonpointer==2.4
84+
- jsonschema==4.21.1
85+
- jsonschema-specifications==2023.12.1
86+
- jupyter==1.0.0
87+
- jupyter-client==8.6.1
88+
- jupyter-console==6.6.3
89+
- jupyter-core==5.7.2
90+
- jupyter-events==0.10.0
91+
- jupyter-lsp==2.2.5
92+
- jupyter-server==2.14.0
93+
- jupyter-server-terminals==0.5.3
94+
- jupyterlab==4.1.6
95+
- jupyterlab-pygments==0.3.0
96+
- jupyterlab-server==2.26.0
97+
- jupyterlab-widgets==3.0.10
98+
- kiwisolver==1.4.5
99+
- lab==8.1
100+
- markdown-it-py==3.0.0
101+
- markupsafe==2.1.5
102+
- matplotlib==3.8.4
103+
- matplotlib-inline==0.1.7
104+
- mdurl==0.1.2
105+
- mistune==3.0.2
106+
- mpmath==1.3.0
107+
- multidict==6.0.5
108+
- multiprocess==0.70.16
109+
- nbclient==0.10.0
110+
- nbconvert==7.16.3
111+
- nbformat==5.10.4
112+
- nest-asyncio==1.6.0
113+
- networkx==3.2.1
114+
- nltk==3.8.1
115+
- notebook==7.1.3
116+
- notebook-shim==0.2.4
117+
- numpy==1.26.4
118+
- openai==0.28.0
119+
- openai-parallel-toolkit==0.5.1
120+
- openpyxl==3.1.2
121+
- overrides==7.7.0
122+
- packaging==24.0
123+
- pandas==2.2.2
124+
- pandocfilters==1.5.1
125+
- parso==0.8.4
126+
- pexpect==4.9.0
127+
- pillow==10.3.0
128+
- pip==23.3.1
129+
- platformdirs==4.2.0
130+
- prometheus-client==0.20.0
131+
- prompt-toolkit==3.0.43
132+
- protobuf==5.27.2
133+
- psutil==5.9.8
134+
- ptyprocess==0.7.0
135+
- pure-eval==0.2.2
136+
- pyarrow==16.1.0
137+
- pyarrow-hotfix==0.6
138+
- pycparser==2.22
139+
- pydantic==2.7.0
140+
- pydantic-core==2.18.1
141+
- pygments==2.17.2
142+
- pyparsing==3.1.2
143+
- python-dateutil==2.9.0.post0
144+
- python-json-logger==2.0.7
145+
- pytz==2024.1
146+
- pyyaml==6.0.1
147+
- pyzmq==26.0.2
148+
- qtconsole==5.5.1
149+
- qtpy==2.4.1
150+
- referencing==0.34.0
151+
- regex==2024.4.28
152+
- requests==2.32.3
153+
- rfc3339-validator==0.1.4
154+
- rfc3986-validator==0.1.1
155+
- rich==13.7.1
156+
- rpds-py==0.18.0
157+
- safetensors==0.4.3
158+
- send2trash==1.8.3
159+
- sentencepiece==0.2.0
160+
- setuptools==68.2.2
161+
- shellingham==1.5.4
162+
- simplejson==3.19.2
163+
- six==1.16.0
164+
- sniffio==1.3.1
165+
- soupsieve==2.5
166+
- stack-data==0.6.3
167+
- sympy==1.12
168+
- tabulate==0.9.0
169+
- terminado==0.18.1
170+
- tiktoken==0.6.0
171+
- tinycss2==1.2.1
172+
- together==1.2.0
173+
- tokenizers==0.19.1
174+
- torch==2.3.0
175+
- tornado==6.4
176+
- tqdm==4.66.2
177+
- traitlets==5.14.3
178+
- transformers==4.41.2
179+
- txt2tags==3.9
180+
- typer==0.12.3
181+
- types-python-dateutil==2.9.0.20240316
182+
- typing-extensions==4.11.0
183+
- tzdata==2024.1
184+
- uri-template==1.3.0
185+
- urllib3==2.2.1
186+
- wcwidth==0.2.13
187+
- webcolors==1.13
188+
- webencodings==0.5.1
189+
- websocket-client==1.7.0
190+
- wheel==0.41.2
191+
- widgetsnbextension==4.0.10
192+
- xxhash==3.4.1
193+
- yarl==1.9.4
194+
prefix: /opt/anaconda3/envs/medcalc-bench-final

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