ubuntu.yml

# This is a basic workflow to help you get started with Actions

name: Ubuntu R

# Controls when the workflow will run
on:
  # Triggers the workflow on push or pull request events but only for the main
  # branch
  push:
    branches: [ main ]
  pull_request:
    branches: [ main ]

  # Allows you to run this workflow manually from the Actions tab
  workflow_dispatch:

# A workflow run is made up of one or more jobs that can run sequentially or in
# parallel
jobs:
  # This workflow contains a single job called "build"
  build:
    # The type of runner that the job will run on
    runs-on: ubuntu-latest
    strategy:
      matrix:
        r-version: ['4.2.1']

    # Steps represent a sequence of tasks that will be executed as part of the
    # job
    steps:
     - uses: actions/checkout@v2
     - uses: conda-incubator/setup-miniconda@v2
       with:
          activate-environment: test
          python-version: 3.8
          auto-activate-base: false
     - name: install system dependencies
       shell: bash
       run: |
         sudo apt-get update -y
         sudo apt-get install -y wget git gawk findutils
         xargs -a <(awk '! /^ *(#|$)/' ".github/workflows/apt.txt") -r -- \
              sudo apt-get install -y --no-install-recommends --no-install-suggests

    # Steps to install R dependencies
     - uses: actions/checkout@v3
     - name: Set up R ${{ matrix.r-version }}
       uses: r-lib/actions/setup-r@v2
       with:
        r-version: ${{ matrix.r-version }}

     - name: Install dependencies
       run: |
         ./requirements/requirements.R
       shell: bash

     - name: Load package and run test
       run: |
         devtools::test()
       shell: Rscript {0}