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lines changed Original file line number Diff line number Diff line change @@ -12,12 +12,17 @@ on signal shape, examine cycling detection reproducibility across biological
1212datasets, and optimize experimental design for cycle detection.
1313TimeTrial is currently in beta.
1414
15+ Try TimeTrial Online powered by Rstudio's shinyapps.io:
16+
17+ - [ TimeTrial Synthetic Data App ] ( https://nesscoder.shinyapps.io/TimeTrial_Synthetic/ )
18+ - [ TimeTrial Real Data App ] ( https://nesscoder.shinyapps.io/TimeTrial_Real/ )
19+
1520Watch our [ introductory video] ( https://vimeo.com/388290542 ) for TimeTrial training material.
1621
1722[ ![ TimeTrial] ( https://res.cloudinary.com/marcomontalbano/image/upload/v1580425724/video_to_markdown/images/vimeo--388290542-c05b58ac6eb4c4700831b2b3070cd403.jpg )] ( https://vimeo.com/388290542 " TimeTrial ")
1823
1924***
20- ### Installation Instructions
25+ ### Local Installation Instructions
21261 . Clone the TimeTrial repo to your Desktop (Mac)
2227 - ` git clone https://github.com/nesscoder/TimeTrial.git ~/Desktop `
23282 . Open The TimeTrial_Synthetic.R or TimeTrial_Real.R using RStudio
@@ -48,6 +53,43 @@ The TimeTrial Git Repository includes the following:
4853
4954
5055***
56+
57+ R version 3.6.3 (2020-02-29)
58+
59+ Packages:
60+ - limma_3.42.2
61+ - rain_1.20.0
62+ - multtest_2.42.0
63+ - Biobase_2.46.0
64+ - BiocGenerics_0.32.0 gmp_0.5-13.6
65+ - BiocManager_1.30.10
66+ - gridGraphics_0.5-0
67+ - gridExtra_2.3
68+ - eulerr_6.1.0
69+ - UpSetR_1.4.0
70+ - vembedr_0.1.3
71+ - htmltools_0.4.0
72+ - shinyjs_1.1
73+ - pROC_1.16.2
74+ - pastecs_1.3.21
75+ - shinythemes_1.1.2
76+ - matrixStats_0.56.0
77+ - gplots_3.0.3
78+ - forcats_0.5.0
79+ - stringr_1.4.0
80+ - dplyr_0.8.5
81+ - purrr_0.3.4
82+ - readr_1.3.1
83+ - tidyr_1.0.2
84+ - tibble_3.0.1
85+ - tidyverse_1.3.0
86+ - plyr_1.8.6
87+ - ggplot2_3.3.0
88+ - shiny_1.4.0.2
89+
90+
91+ ***
92+
5193TimeTrial is Currently in Preprint on BioRxiv:
5294[ See Article] ( https://doi.org/10.1101/2020.04.15.043695 )
5395
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