Merge pull request #96 from netZoo/devel

Devel

Author: marouenbg

README.md

@@ -11,7 +11,7 @@ Macos[![MAC](https://travis-ci-job-status.herokuapp.com/badge/netZoo/netZooM/mas
 netZooM is a MATLAB package of network methods.
 
 ## Zoo animals
-PANDA, LIONESS, PUMA, SPIDER, and optPANDA.
+(gpu)PANDA, (gpu)LIONESS, PUMA, SPIDER, and optPANDA.
 
 ## Quick guide
 `git clone https://github.com/netZoo/netZooM.git` into your local disk. 

docs/_build/doctrees/changelog.doctree

@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 01a9025aa3cdb89dfac98311664e22a1
+config: 3cbe1e0006f5a8207147f1ee802822b3
 tags: 645f666f9bcd5a90fca523b33c5a78b7

docs/_build/doctrees/environment.pickle

@@ -2,6 +2,46 @@
 Changelog
 ==========
 
-* :feature:`-` added differential targeting tutorial
-* :release:`0.1.0 <2019-6-28>`
-* :feature:`-` Changelog added to the doc
+0.4.3 (2019-03-01)
+------------------
+
+- gpuPANDA and gpuLIONESS
+- gpuPANDA and gpuLIONESS tutorials 
+
+0.4.2 (2019-01-09)
+------------------
+
+- optPANDA 
+- optPANDA tutorial
+
+0.4.1 (2019-01-01)
+------------------
+
+- Cross-plateform haramonization of PANDA behavior.
+- Data processing was set to 'Union' by default.
+
+0.4.0 (2019-11-19)
+------------------
+
+- SPIDER
+
+0.3.0 (2019-11-17)
+------------------
+
+- PUMA
+- differential targeting tutorial
+- GRAND database tutorial
+
+0.2.0 (2019-11-13)
+------------------
+
+- LIONESS
+- PANDA tutorial
+- LIONESS tutorial
+
+0.1.0 (2019-5-28)
+------------------
+
+- Changelog added to the doc
+
+- PANDA

docs/_build/doctrees/install/index.doctree

@@ -10,11 +10,9 @@ To install netZooM on your computer, please check the following requirements:
 
 ## Install
 
-- git clone https://github.com/netZoo/netZooM.git
+- `git clone https://github.com/netZoo/netZooM.git`
 
-- In MATLAB console, add netZooM to your path:
-
-- `addpath(genpath('netZooM'))`
+- In MATLAB console, add netZooM to your path through `addpath(genpath('netZooM'))`
 
 ## Troubleshooting
 

docs/_build/doctrees/tutos/index.doctree

@@ -5,3 +5,11 @@ Tutorials in netZooM are the following case studies:
 - [Reconstruction of gene regulatory networks using PANDA](https://github.com/netZoo/netZooM/tree/master/tutorials/panda)
 
 - [Generating single-sample gene regulatory networks using LIONESS](https://github.com/netZoo/netZooM/tree/master/tutorials/lioness)
+
+- [Differential targeting analysis using PANDA and LIONESS](https://github.com/netZoo/netZooM/tree/devel/tutorials/differential_targeting)
+
+- [Using GRAND database's API for reproducible network reconstruction](https://github.com/netZoo/netZooM/tree/devel/tutorials/grand_db)
+
+- [Accurate reconstruction of gene regulatory networks using optPANDA](https://github.com/netZoo/netZooM/tree/devel/tutorials/opt_panda)
+
+- [gpuPANDA and gpuLIONESS: Accelerated inference of gene regulatory networks using the Graphical Processing Unit](https://github.com/netZoo/netZooM/tree/devel/tutorials/gpu_panda_lioness)

docs/_build/html/.buildinfo

@@ -1,6 +1,6 @@
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     URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
-    VERSION: '0.1',
+    VERSION: '0.2',
     LANGUAGE: 'None',
     COLLAPSE_INDEX: false,
     FILE_SUFFIX: '.html',