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* update test suite (#140)

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* fix spider test

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* removed macos from tests

* fix savepairs (#142)

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* add eye in PPI (#145)

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* update tfcoop

* add python gt data

* add labels to panda test

* expand test data

* rename optpanda to boa (#144)

* fix typo (#148)

* fix typo

* update aactions

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* fix motif saving pairs

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* Update README.md

Author: marouenbg

.github/workflows/main.yml

@@ -28,7 +28,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     strategy:
       matrix:
-        os: [ubuntu-latest]
+        os: [ubuntu-20.04]
 
     steps:
 
@@ -37,9 +37,11 @@ jobs:
           token: ${{ secrets.GITHUB_TOKEN }}
       - name: Set up MATLAB
         uses: matlab-actions/setup-matlab@v1
+        with:
+          release: R2020a
 
       - name: install bedtools ubuntu
-        if: matrix.os == 'ubuntu-latest'
+        if: matrix.os == 'ubuntu-20.04'
         run: |
          wget https://github.com/arq5x/bedtools2/releases/download/v2.29.0/bedtools-2.29.0.tar.gz
          tar -zxvf bedtools-2.29.0.tar.gz

README.md

@@ -5,13 +5,13 @@
 [![Documentation Status](https://readthedocs.org/projects/netzoom/badge/?version=latest)](https://netzoom.readthedocs.io/en/latest/?badge=latest)
 [![tutorials](https://img.shields.io/badge/netZooM-tutorials-9cf)](https://github.com/netZoo/netZooM/tree/master/tutorials)
 
-netZooM is tested on: (OS: Ubuntu) X (Language: MATLAB)
+netZooM is tested on: (OS: Ubuntu 20.04) X (Language: MATLAB R2020a)
 
 ## Description
 netZooM is a MATLAB package of network methods.
 
 ## Zoo animals
-(gpu)PANDA, (gpu)LIONESS, (gpu)PUMA, (gpu)SPIDER, optPANDA, and OTTER.
+(gpu)PANDA, (gpu)LIONESS, (gpu)PUMA, (gpu)SPIDER, BOA, and OTTER.
 
 ## Quick guide
 Clone the repository into your local disk:

netZooM/optpanda/createPpiMotifFileLink.m netZooM/boa/createPpiMotifFileLink.mnetZooM/optpanda/createPpiMotifFileLink.m renamed to netZooM/boa/createPpiMotifFileLink.m

@@ -47,7 +47,7 @@
 % Outputs:
 %             RegNet   : inferred gene-TF regulatory network
 % Author(s):
-%             Kimberley Glass
+%             Kimberly Glass
 % Publications:
 %               https://doi.org/10.1371/journal.pone.0064832