Merge pull request #378 from taraeicher/fixWarningsInBuild #801
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| # This workflow uses actions that are not certified by GitHub. | |
| # They are provided by a third-party and are governed by | |
| # separate terms of service, privacy policy, and support | |
| # documentation. | |
| # | |
| # See https://github.com/r-lib/actions/tree/master/examples#readme for | |
| # additional example workflows available for the R community. | |
| name: netZooR | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - devel | |
| pull_request: | |
| branches: | |
| - master | |
| - devel | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| timeout-minutes: 300 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| r-version: [4.4] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| - uses: r-lib/actions/setup-pandoc@v2.11.3 | |
| - name: Set up R ${{ matrix.r-version }} | |
| uses: r-lib/actions/setup-r@v2.11.3 | |
| with: | |
| r-version: ${{ matrix.r-version }} | |
| - name: install dependencies | |
| uses: r-lib/actions/setup-r-dependencies@v2.11.3 | |
| with: | |
| cache-version: 2 | |
| extra-packages: | | |
| any::rcmdcheck | |
| any::covr | |
| needs: | | |
| website | |
| coverage | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.x' | |
| - name: Install Python packages | |
| run: | | |
| pip install --upgrade pip | |
| pip install numpy scipy pandas joblib | |
| shell: bash | |
| - name: Set RETICULATE_PYTHON | |
| run: | | |
| echo "RETICULATE_PYTHON=$(python -c 'import sys; print(sys.executable)')" >> $GITHUB_ENV | |
| shell: bash | |
| - name: Check | |
| uses: r-lib/actions/check-r-package@v2.11.3 | |
| with: | |
| args: 'c("--no-manual", "--ignore-vignettes")' | |
| build_args: 'c("--no-build-vignettes")' | |
| error-on: '"error"' | |
| - name: Report coverage | |
| run: | | |
| covr::codecov() | |
| shell: Rscript {0} |