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[TEST] Fixes tests for fetch_cammoun2012
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+11
-4
lines changed

2 files changed

+11
-4
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netneurotools/tests/test_datasets.py

Lines changed: 9 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -72,10 +72,11 @@ def test_fetch_fsaverage(tmpdir, version):
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@pytest.mark.parametrize('version, expected', [
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('volume', [1, 1, 1, 1, 1]),
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('MNI152NLin2009aSym', [1, 1, 1, 1, 1]),
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('fsaverage', [2, 2, 2, 2, 2]),
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('fsaverage5', [2, 2, 2, 2, 2]),
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('fsaverage6', [2, 2, 2, 2, 2]),
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('fslr32k', [2, 2, 2, 2, 2]),
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('gcs', [2, 2, 2, 2, 6])
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])
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def test_fetch_cammoun2012(tmpdir, version, expected):
@@ -139,9 +140,14 @@ def test_fetch_schaefer2018(tmpdir, version):
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for k in keys)
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def test_fetch_hcp_standards(tmpdir):
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hcp = datasets.fetch_hcp_standards(data_dir=tmpdir, verbose=0)
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assert os.path.isdir(hcp)
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@pytest.mark.parametrize('dset, expected', [
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('atl-cammoun2012', ['volume', 'fsaverage', 'fsaverage5', 'fsaverage6',
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'gcs']),
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('atl-cammoun2012', ['fsaverage', 'fsaverage5', 'fsaverage6', 'fslr32k',
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'MNI152NLin2009aSym', 'gcs']),
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('tpl-conte69', ['url', 'md5']),
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('atl-pauli2018', ['url', 'md5', 'name']),
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('tpl-fsaverage', ['fsaverage' + f for f in ['', '3', '4', '5', '6']]),

netneurotools/tests/test_utils.py

Lines changed: 2 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -33,7 +33,8 @@ def test_add_triu():
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])
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def test_get_centroids(tmpdir, scale, expected):
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# fetch test dataset
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cammoun = datasets.fetch_cammoun2012('volume', data_dir=tmpdir, verbose=0)
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cammoun = datasets.fetch_cammoun2012('MNI152NLin2009aSym', data_dir=tmpdir,
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verbose=0)
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ijk = utils.get_centroids(cammoun[scale])
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xyz = utils.get_centroids(cammoun[scale], image_space=True)

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