-
Notifications
You must be signed in to change notification settings - Fork 4
Open
Labels
enhancementNew feature or requestNew feature or request
Milestone
Description
Functions like map_genes and aggregate_genes rely on "gprofiler" as the only method that can do gene synonym matching.
However, this requires internet access and the gprofiler databases sometime breaks down randomly.
For example, today during checks:
ββ Error (test-run_benchmark.R:3:5): run_benchmark works βββββββββββββββββββββββ
Error in `gprofiler2::gconvert(query = ranges, organism = species, ...)`: Bad request, response code 400
Backtrace:
Would be good to have non-gprofiler alternatives for all functions, including these.
Reactions are currently unavailable
Metadata
Metadata
Assignees
Labels
enhancementNew feature or requestNew feature or request