Optophysiology project and goals (#108)

* Add draft description

* Add derotation (should we?) | sphinx-build breaks 🐛

* Change name

* Fix icon name

* Fix broken links

* Update docs/source/projects.md

Co-authored-by: Adam Tyson <[email protected]>

* Update docs/source/projects.md

Co-authored-by: Adam Tyson <[email protected]>

* Update docs/source/projects.md

Co-authored-by: Adam Tyson <[email protected]>

* Update docs/source/projects.md

Co-authored-by: Adam Tyson <[email protected]>

* Update docs/source/projects.md

---------

Co-authored-by: Adam Tyson <[email protected]>

Author: lauraporta

docs/source/blog/neuroblueprint.md

@@ -153,7 +153,7 @@ levels. The naming of these folders should adhere to a certain style, as exempli
 <br>
 
 While the full specification is available to read 
-[here](https://neuroblueprint.neuroinformatics.dev/specification.html), 
+[here](https://neuroblueprint.neuroinformatics.dev/latest/specification.html), 
 we provide a brief summary of its main features:
 
 - A top-level distinction splitting raw data ("rawdata") and data derived from processing the raw data ("derivatives")
@@ -173,7 +173,7 @@ but recommendations for these are in development.
 ### Getting Started
 
 Getting started with **NeuroBlueprint** is as easy as reading the 
-[specification](https://neuroblueprint.neuroinformatics.dev/specification.html), and organising your experimental 
+[specification](https://neuroblueprint.neuroinformatics.dev/latest/specification.html), and organising your experimental 
 folders according to the standard.  It's recommended to get started by using **NeuroBlueprint** with your 
 next experiment, rather than trying to re-organise existing folders and analysis code, which is always tricky.
 

docs/source/projects.md

@@ -51,6 +51,27 @@ test different pipeline configurations.
 :::
 ::::
 
+
+(projects-optophysiology)=
+## Optophysiology
+::::{grid} 1 1 1 1
+:::{grid-item-card} {fas}`sun;sd-text-primary` photon-mosaic
+:link: https://github.com/neuroinformatics-unit/photon-mosaic
+photon-mosaic simplifies the analysis of multi-photon calcium imaging data by integrating algorithms from tools like Suite2p and CaImAn into a modular pipeline. Researchers can evaluate, compare, and combine methods for each processing step, such as registration or source extraction, and explore metrics to identify the best fit for their datasets.
+
+With support for local or cluster-based parallelization, photon-mosaic provides visualization tools, reports, and guides to streamline decision-making and enhance reproducibility.
+:::
+::::
+
+::::{grid} 1 1 1 1
+:::{grid-item-card} {fas}`stroopwafel;sd-text-primary` derotation
+:link: https://github.com/neuroinformatics-unit/derotation
+A python library to solve sample-rotation artifacts in multiphoton imaging data acquired with a line scanning microscope.
+:::
+::::
+
+
+
 (projects-data-management)=
 ## Data Management
 ::::{grid} 1 1 1 1

docs/source/roadmaps/june-2024.md

@@ -19,7 +19,7 @@ longer-term goal of multimodal integration. The detailed roadmap is split into t
 We have developed [NeuroBlueprint](https://neuroblueprint.neuroinformatics.dev/), a simple, standard data folder 
 specification for (systems) neuroscience and [datashuttle](https://datashuttle.neuroinformatics.dev/), to automate the 
 creation, validation and transfer of NeuroBlueprint projects. For more details on these specific projects, see the 
-[NeuroBlueprint](https://neuroblueprint.neuroinformatics.dev/roadmap.html) and 
+[NeuroBlueprint](https://neuroblueprint.neuroinformatics.dev/latest/roadmap.html) and 
 [datashuttle](https://datashuttle.neuroinformatics.dev/pages/community/roadmap.html) roadmaps.
 
 **Q4 2024**