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🐛 bugSomething isn't workingSomething isn't workingpriorityMore important than other issuesMore important than other issues
Description
Describe the bug
When suite2p.smk is running with cellpose-SAM, it does not load CUDA modules, which will lead to this message:
INFO:cellpose.core:Neither TORCH CUDA nor MPS version not installed/working.
Expected behaviour
We should implement Snakemake's envmodules feature: https://snakemake.readthedocs.io/en/stable/snakefiles/deployment.html
Additional context
With SWC's HPC, one usually needs to run module load cuda/12.4 to make it work. See also #21
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