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tyarkonityarkoni
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initial commit -- working but incomplete schemas
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‎definitions.json‎

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{
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"Dataset": {
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"properties": [
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["study", "nimads:Study"]
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]
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},
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"Study": {
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"properties": [
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["analysis", "nimads:Analysis"],
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["publication", "schema:ScholarlyArticle"],
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["condition", "nimads:Condition"]
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]
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},
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"Analysis": {
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"properties": [
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["image", "nimads:Image"],
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["point", "nimads:Point"],
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["condition", "nimads:Condition"],
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["weight", "schema:Float"]
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]
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},
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"Point": {
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"properties": [
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["coordinates", "nimads:Coordinates"],
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["space", "schema:Text"],
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["value", "nimads:Value"],
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["type", "schema:Text"]
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]
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},
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"Value": {
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"properties": [
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["type", "schema:Text"],
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["value", "schema:Float"]
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]
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},
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"Image": {
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"properties": [
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["space", "schema:Text"],
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["path", "schema:Text"],
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["valueType", "schema:Text"]
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]
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},
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"Condition": {
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"properties": []
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}
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}

‎generate_jsonld.py‎

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import json
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from collections import defaultdict
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import os
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defs = json.load(open('definitions.json', 'r'))
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classes = defaultdict(list)
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props = defaultdict(lambda: defaultdict(list))
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wrap = lambda x: "nimads:{}".format(x) if ':' not in x else x
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for t_name, data in defs.items():
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for p_name, p_type in data['properties']:
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## Type properties
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classes[t_name].append({
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"@id": wrap(p_name),
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"schema:domainIncludes": {"@id": wrap(t_name)}
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})
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# Property mappings
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props[p_name]["domainIncludes"].append({"@id": wrap(t_name)})
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props[p_name]["rangeIncludes"].append({"@id": wrap(p_type)})
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if 'nimads' in p_type:
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p_type = p_type.split(':')[1]
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classes[p_type].append({
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"@id": wrap(p_name),
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"schema:rangeIncludes": {"@id": wrap(p_type)}
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})
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context = {
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"schema": "http://schema.org/",
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"rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#",
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"rdfs": "http://www.w3.org/2000/01/rdf-schema#",
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"nimads": "http://neurostuff.org/nimads/"
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}
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for c, c_props in classes.items():
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graph = [
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{
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"@id": wrap(c),
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"@type": "rdfs:Class",
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"rdfs:comment": "A NIMADS {}".format(c),
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"rdfs:label": c,
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"rdfs:subClassOf": {"@id": "schema:Thing"}
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}
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] + c_props
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data = {
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"@context": context,
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"@graph": graph
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}
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with open(os.path.join('nimads', c + '.jsonld'), 'w') as f:
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json.dump(data, f, indent=2)
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for c, entries in props.items():
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data = {
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"@context": context,
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"@id": wrap(c),
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"@type": "rdf:Property",
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"rdfs:label": c
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}
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data.update(entries)
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with open(os.path.join('nimads', '_' + c + '.jsonld'), 'w') as f:
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json.dump(data, f, indent=2)

‎nimads/Dataset.jsonld‎

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{
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"@context": {
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"schema": "http://schema.org/",
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"rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#",
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"rdfs": "http://www.w3.org/2000/01/rdf-schema#",
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"nimads": "http://neurostuff.org/nimads/"
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},
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"@graph": [
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{
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"@id": "nimads:Dataset",
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"@type": "rdfs:Class",
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"rdfs:comment": "A NIMADS Dataset",
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"rdfs:label": "Dataset",
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"rdfs:subClassOf": {
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"@id": "schema:Thing"
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}
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},
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{
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"@id": "nimads:study",
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"schema:domainIncludes": {
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"@id": "nimads:Dataset"
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}
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}
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]
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}

‎nimads/_analysis.jsonld‎

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{
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"@context": {
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"schema": "http://schema.org/",
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"rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#",
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"rdfs": "http://www.w3.org/2000/01/rdf-schema#",
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"nimads": "http://neurostuff.org/nimads/"
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},
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"@id": "nimads:analysis",
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"@type": "rdf:Property",
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"rdfs:label": "analysis",
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"domainIncludes": [
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{
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"@id": "nimads:Study"
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}
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],
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"rangeIncludes": [
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{
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"@id": "nimads:Analysis"
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}
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]
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}

‎nimads/_condition.jsonld‎

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{
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"@context": {
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"schema": "http://schema.org/",
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"rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#",
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"rdfs": "http://www.w3.org/2000/01/rdf-schema#",
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"nimads": "http://neurostuff.org/nimads/"
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},
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"@id": "nimads:condition",
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"@type": "rdf:Property",
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"rdfs:label": "condition",
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"domainIncludes": [
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{
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"@id": "nimads:Study"
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},
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{
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"@id": "nimads:Analysis"
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}
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],
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"rangeIncludes": [
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{
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"@id": "nimads:Condition"
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},
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{
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"@id": "nimads:Condition"
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}
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]
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}

‎nimads/_coordinates.jsonld‎

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{
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"@context": {
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"schema": "http://schema.org/",
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"rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#",
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"rdfs": "http://www.w3.org/2000/01/rdf-schema#",
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"nimads": "http://neurostuff.org/nimads/"
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},
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"@id": "nimads:coordinates",
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"@type": "rdf:Property",
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"rdfs:label": "coordinates",
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"domainIncludes": [
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{
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"@id": "nimads:Point"
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}
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],
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"rangeIncludes": [
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{
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"@id": "nimads:Coordinates"
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}
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]
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}

‎nimads/_image.jsonld‎

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{
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"@context": {
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"schema": "http://schema.org/",
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"rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#",
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"rdfs": "http://www.w3.org/2000/01/rdf-schema#",
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"nimads": "http://neurostuff.org/nimads/"
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},
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"@id": "nimads:image",
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"@type": "rdf:Property",
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"rdfs:label": "image",
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"domainIncludes": [
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{
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"@id": "nimads:Analysis"
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}
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],
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"rangeIncludes": [
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{
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"@id": "nimads:Image"
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}
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]
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}

‎nimads/_path.jsonld‎

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{
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"@context": {
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"schema": "http://schema.org/",
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"rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#",
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"rdfs": "http://www.w3.org/2000/01/rdf-schema#",
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"nimads": "http://neurostuff.org/nimads/"
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},
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"@id": "nimads:path",
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"@type": "rdf:Property",
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"rdfs:label": "path",
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"domainIncludes": [
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{
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"@id": "nimads:Image"
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}
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],
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"rangeIncludes": [
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{
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"@id": "schema:Text"
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}
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]
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}

‎nimads/_point.jsonld‎

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{
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"@context": {
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"schema": "http://schema.org/",
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"rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#",
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"rdfs": "http://www.w3.org/2000/01/rdf-schema#",
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"nimads": "http://neurostuff.org/nimads/"
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},
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"@id": "nimads:point",
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"@type": "rdf:Property",
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"rdfs:label": "point",
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"domainIncludes": [
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{
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"@id": "nimads:Analysis"
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}
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],
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"rangeIncludes": [
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{
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"@id": "nimads:Point"
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}
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]
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}

‎nimads/_publication.jsonld‎

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{
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"@context": {
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"schema": "http://schema.org/",
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"rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#",
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"rdfs": "http://www.w3.org/2000/01/rdf-schema#",
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"nimads": "http://neurostuff.org/nimads/"
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},
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"@id": "nimads:publication",
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"@type": "rdf:Property",
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"rdfs:label": "publication",
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"domainIncludes": [
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{
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"@id": "nimads:Study"
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}
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],
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"rangeIncludes": [
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{
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"@id": "schema:ScholarlyArticle"
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}
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]
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}

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