update run and explore

Author: jdkent

run_and_explore.ipynb

@@ -17,7 +17,8 @@
       "execution_count": null,
       "id": "28d0e8b6-9bbd-4256-a19a-ff36eeca5cfd",
       "metadata": {
-        "id": "28d0e8b6-9bbd-4256-a19a-ff36eeca5cfd"
+        "id": "28d0e8b6-9bbd-4256-a19a-ff36eeca5cfd",
+        "cellView": "form"
       },
       "outputs": [],
       "source": [
@@ -28,32 +29,6 @@
         "pip install -r requirements.txt"
       ]
     },
-    {
-      "cell_type": "markdown",
-      "id": "37860b1b-5031-4bd7-8e86-c668f545126b",
-      "metadata": {
-        "id": "37860b1b-5031-4bd7-8e86-c668f545126b"
-      },
-      "source": [
-        "## INSERT YOUR META-ANALYSIS ID HERE\n",
-        "\n",
-        "This is the id for your specific meta-analysis"
-      ]
-    },
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "id": "178c5406-2625-4048-af3c-c01bdb5e1b56",
-      "metadata": {
-        "id": "178c5406-2625-4048-af3c-c01bdb5e1b56"
-      },
-      "outputs": [],
-      "source": [
-        "#@title Set your Neurosynth-Compose Meta-Analysis ID { run: \"auto\" }\n",
-        "META_ID = input(\"Paste the 12 character ID of the meta-analysis here: \")  # for example: \"8dJ6tG7wfbyS\"\n",
-        "META_ID = META_ID.replace(\" \", \"\")"
-      ]
-    },
     {
       "cell_type": "markdown",
       "id": "7dccf070-a1cc-4471-97f1-d386374a80df",
@@ -67,27 +42,19 @@
         "run the selected algorithm and corrector (optional) on the studyset selected."
       ]
     },
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "id": "8aee063b-9a03-4cd0-8de5-46b66cdf19c4",
-      "metadata": {
-        "id": "8aee063b-9a03-4cd0-8de5-46b66cdf19c4"
-      },
-      "outputs": [],
-      "source": [
-        "from pynsc.run import run  #  special workflow to run meta-analysis"
-      ]
-    },
     {
       "cell_type": "code",
       "execution_count": null,
       "id": "51a1e194-af1a-461c-a73f-3e79a31db95f",
       "metadata": {
-        "id": "51a1e194-af1a-461c-a73f-3e79a31db95f"
+        "id": "51a1e194-af1a-461c-a73f-3e79a31db95f",
+        "cellView": "form"
       },
       "outputs": [],
       "source": [
+        "#@title Insert the Meta-Analysis ID and Execute your Meta-Analysis { vertical-output: true }\n",
+        "from pynsc.run import run  #  special workflow to run meta-analysis\n",
+        "META_ID = \"\" #@param {type:\"string\"}\n",
         "url = meta_result = None\n",
         "if META_ID is not None:\n",
         "    url, meta_result = run(META_ID)\n",
@@ -139,6 +106,7 @@
     {
       "cell_type": "code",
       "source": [
+        "#@title Download the Report\n",
         "from google.colab import files\n",
         "import shutil\n",
         "\n",
@@ -154,7 +122,8 @@
         "\n"
       ],
       "metadata": {
-        "id": "1g7ewj1h2Xtw"
+        "id": "1g7ewj1h2Xtw",
+        "cellView": "form"
       },
       "id": "1g7ewj1h2Xtw",
       "execution_count": null,
@@ -164,10 +133,12 @@
       "cell_type": "code",
       "execution_count": null,
       "metadata": {
-        "id": "9OyC1_bSEccg"
+        "id": "9OyC1_bSEccg",
+        "cellView": "form"
       },
       "outputs": [],
       "source": [
+        "#@title Display the Report\n",
         "import portpicker\n",
         "import threading\n",
         "import socket\n",
@@ -198,16 +169,6 @@
         "output.serve_kernel_port_as_iframe(port, path='/report/report.html')"
       ],
       "id": "9OyC1_bSEccg"
-    },
-    {
-      "cell_type": "code",
-      "source": [],
-      "metadata": {
-        "id": "uBujVXqe-DqW"
-      },
-      "id": "uBujVXqe-DqW",
-      "execution_count": null,
-      "outputs": []
     }
   ],
   "metadata": {