params-dsl.nf

#!/usr/bin/env nextflow
/*
 * Copyright 2013-2024, Seqera Labs
 *
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 *
 *     http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */

params {
  // Comma-separated list of IDs.
  input: String

  // Whether to save intermediate outputs.
  save_intermeds: Boolean

  // Method to use for analyzing samples.
  method: String = 'auto'
}

workflow {
  main:
  println "params.input = ${params.input.tokenize(',')}"
  println "params.save_intermeds = ${params.save_intermeds}"
  println "params.method = ${params.method}"
}