Move kuberun code to nf-cli-v1

Signed-off-by: Ben Sherman <bentshermann@gmail.com>

Author: bentsherman

modules/nf-cli-v1/build.gradle

@@ -19,6 +19,7 @@ compileGroovy {
 
 dependencies {
     api(project(':nextflow'))
+    api(project(':plugins:nf-k8s'))
     api(project(':nf-lineage'))
     api "com.beust:jcommander:1.35"
 

modules/nf-cli-v1/src/main/groovy/nextflow/cli/CmdKubeRun.groovy

@@ -21,6 +21,7 @@ import com.beust.jcommander.Parameters
 import groovy.transform.CompileStatic
 import groovy.util.logging.Slf4j
 import nextflow.exception.AbortOperationException
+import nextflow.k8s.K8sDriverLauncher
 import nextflow.plugin.Plugins
 import org.pf4j.ExtensionPoint
 /**
@@ -33,10 +34,6 @@ import org.pf4j.ExtensionPoint
 @Parameters(commandDescription = "Execute a workflow in a Kubernetes cluster (experimental)")
 class CmdKubeRun extends CmdRun {
 
-    interface KubeCommand extends ExtensionPoint {
-        int run(CmdKubeRun cmd, String pipeline, List<String> args)
-    }
-
     static private String POD_NAME = /[a-z0-9]([-a-z0-9]*[a-z0-9])?(\.[a-z0-9]([-a-z0-9]*[a-z0-9])?)*/
 
     /**
@@ -98,11 +95,17 @@ class CmdKubeRun extends CmdRun {
             headImage = podImage
         }
         checkRunName()
-        Plugins.init()
-        Plugins.start('nf-k8s')
-        // load the command operations
-        final command = Plugins.getExtension(KubeCommand)
-        final status = command.run(this, pipeline, scriptArgs)
+        final driver = new K8sDriverLauncher(
+            cmd: this,
+            runName: runName,
+            headImage: headImage,
+            background: background(),
+            headCpus: headCpus,
+            headMemory: headMemory,
+            headPreScript: headPreScript,
+            plugins: plugins )
+        driver.run(pipeline, scriptArgs)
+        final status = driver.shutdown()
         System.exit(status)
     }
 

…in/nextflow/k8s/K8sDriverLauncher.groovy …vy/nextflow/k8s/K8sDriverLauncher.groovyplugins/nf-k8s/src/main/nextflow/k8s/K8sDriverLauncher.groovy renamed to modules/nf-cli-v1/src/main/groovy/nextflow/k8s/K8sDriverLauncher.groovy plugins/nf-k8s/src/main/nextflow/k8s/K8sDriverLauncher.groovy renamed to modules/nf-cli-v1/src/main/groovy/nextflow/k8s/K8sDriverLauncher.groovy

@@ -33,7 +33,7 @@ configurations {
 }
 
 dependencies {
-    compileOnly project(':nf-cli-v1')
+    compileOnly project(':nextflow')
     compileOnly 'org.slf4j:slf4j-api:2.0.17'
     compileOnly 'org.pf4j:pf4j:3.12.0'
 

…extflow/k8s/K8sDriverLauncherTest.groovy …extflow/k8s/K8sDriverLauncherTest.groovyplugins/nf-k8s/src/test/nextflow/k8s/K8sDriverLauncherTest.groovy renamed to modules/nf-cli-v1/src/test/groovy/nextflow/k8s/K8sDriverLauncherTest.groovy plugins/nf-k8s/src/test/nextflow/k8s/K8sDriverLauncherTest.groovy renamed to modules/nf-cli-v1/src/test/groovy/nextflow/k8s/K8sDriverLauncherTest.groovy

@@ -15,4 +15,3 @@
 #
 
 nextflow.k8s.K8sExecutor
-nextflow.k8s.cli.KubeCommandImpl