How to gracefully pass a nextflow.confg file when submitting task to Azure batch Pool?

[andy-canexia]

Hello, nextflow community,

I am wondering if anyone can generously share a cli example to create and submit tasks to Azure batch?

The one I am using is

az batch task create --job-id myjob --task-id andytask5 --command-line "nextflow run nextflow-io/rnaseq-nf -w az://my-testdata-output/work"

The pool with a custom image from shared image gallary and azure batch job have been created successfully. The error msg I got is about Missing AZURE_STORAGE_ACCOUNT_NAME.

Then I add one more extra args

az batch task create --job-id myjob --task-id andytask6 --command-line "nextflow -C /home/azureuser/nextflow.config run nextflow-io/rnaseq-nf -w az://my-testdata-output/work"

Then, nextflow complained about The specified configuration file does not exist: /home/azureuser/nextflow.config -- check the name or choose another file

I'm wondering if anyone can shed some light? Many thanks!!