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| 1 | +package nextflow.validation |
| 2 | + |
| 3 | +import java.nio.file.Path |
| 4 | + |
| 5 | +import nextflow.plugin.Plugins |
| 6 | +import nextflow.plugin.TestPluginDescriptorFinder |
| 7 | +import nextflow.plugin.TestPluginManager |
| 8 | +import nextflow.plugin.extension.PluginExtensionProvider |
| 9 | +import org.pf4j.PluginDescriptorFinder |
| 10 | +import nextflow.Session |
| 11 | +import spock.lang.Specification |
| 12 | +import spock.lang.Shared |
| 13 | +import org.slf4j.Logger |
| 14 | +import org.junit.Rule |
| 15 | +import test.Dsl2Spec |
| 16 | +import test.OutputCapture |
| 17 | + |
| 18 | +import nextflow.validation.config.ValidationConfig |
| 19 | + |
| 20 | +/** |
| 21 | + * @author : nvnieuwk <[email protected]> |
| 22 | + */ |
| 23 | +class ConfigTest extends Dsl2Spec{ |
| 24 | + |
| 25 | + @Rule |
| 26 | + OutputCapture capture = new OutputCapture() |
| 27 | + |
| 28 | + @Shared String pluginsMode |
| 29 | + |
| 30 | + Path root = Path.of('.').toAbsolutePath().normalize() |
| 31 | + Path getRoot() { this.root } |
| 32 | + String getRootString() { this.root.toString() } |
| 33 | + |
| 34 | + private Session session |
| 35 | + |
| 36 | + def setup() { |
| 37 | + session = Mock(Session) |
| 38 | + session.getBaseDir() >> getRoot() |
| 39 | + } |
| 40 | + |
| 41 | + def 'test valid config' () { |
| 42 | + given: |
| 43 | + def config = [ |
| 44 | + lenientMode: true, |
| 45 | + monochromeLogs: true, |
| 46 | + failUnrecognisedParams: true, |
| 47 | + failUnrecognisedHeaders: true, |
| 48 | + maxErrValSize: 20, |
| 49 | + parametersSchema: 'src/testResources/nextflow_schema.json', |
| 50 | + ignoreParams: ['some_random_param'], |
| 51 | + help: [ |
| 52 | + enabled: true, |
| 53 | + showHidden: true, |
| 54 | + showHiddenParameter: 'stopHiding', |
| 55 | + shortParameter: 'short', |
| 56 | + fullParameter: 'full', |
| 57 | + beforeText: 'before', |
| 58 | + afterText: 'after', |
| 59 | + command: 'command' |
| 60 | + ], |
| 61 | + summary: [ |
| 62 | + beforeText: 'before', |
| 63 | + afterText: 'after', |
| 64 | + hideParams: ['some_random_param'], |
| 65 | + ] |
| 66 | + ] |
| 67 | + def params = [:] |
| 68 | + |
| 69 | + when: |
| 70 | + new ValidationConfig(config, params) |
| 71 | + def stdout = capture |
| 72 | + .toString() |
| 73 | + .readLines() |
| 74 | + .findResults { it.contains('WARN') ? it : null } |
| 75 | + |
| 76 | + then: |
| 77 | + noExceptionThrown() |
| 78 | + !stdout |
| 79 | + } |
| 80 | + |
| 81 | + def 'test valid config - GStrings' () { |
| 82 | + given: |
| 83 | + def randomString = 'randomString' |
| 84 | + def config = [ |
| 85 | + lenientMode: true, |
| 86 | + monochromeLogs: true, |
| 87 | + failUnrecognisedParams: true, |
| 88 | + failUnrecognisedHeaders: true, |
| 89 | + maxErrValSize: 20, |
| 90 | + parametersSchema: "${randomString}", |
| 91 | + ignoreParams: ["${randomString}"], |
| 92 | + help: [ |
| 93 | + enabled: true, |
| 94 | + showHidden: true, |
| 95 | + showHiddenParameter: "${randomString}", |
| 96 | + shortParameter: "${randomString}", |
| 97 | + fullParameter: "${randomString}", |
| 98 | + beforeText: "${randomString}", |
| 99 | + afterText: "${randomString}", |
| 100 | + command: "${randomString}" |
| 101 | + ], |
| 102 | + summary: [ |
| 103 | + beforeText: "${randomString}", |
| 104 | + afterText: "${randomString}", |
| 105 | + hideParams: ["${randomString}"], |
| 106 | + ] |
| 107 | + ] |
| 108 | + def params = [:] |
| 109 | + |
| 110 | + when: |
| 111 | + new ValidationConfig(config, params) |
| 112 | + def stdout = capture |
| 113 | + .toString() |
| 114 | + .readLines() |
| 115 | + .findResults { it.contains('WARN') ? it : null } |
| 116 | + |
| 117 | + then: |
| 118 | + noExceptionThrown() |
| 119 | + !stdout |
| 120 | + } |
| 121 | + |
| 122 | + def 'test invalid config' () { |
| 123 | + given: |
| 124 | + def config = [ |
| 125 | + lenientMode: 'notABoolean', |
| 126 | + monochromeLogs: 12, |
| 127 | + failUnrecognisedParams: 'notABoolean', |
| 128 | + failUnrecognisedHeaders: 'notABoolean', |
| 129 | + showHiddenParams: 'notABoolean', |
| 130 | + maxErrValSize: ["notAnInteger"], |
| 131 | + parametersSchema: 42, |
| 132 | + ignoreParams: true, |
| 133 | + help: [ |
| 134 | + enabled: 'notABoolean', |
| 135 | + showHidden: 'notABoolean', |
| 136 | + showHiddenParameter: 123456789, |
| 137 | + shortParameter: false, |
| 138 | + fullParameter: [im:'a_map'], |
| 139 | + beforeText: true, |
| 140 | + afterText: ['im','a','list'], |
| 141 | + command: 0 |
| 142 | + ], |
| 143 | + summary: [ |
| 144 | + beforeText: 63, |
| 145 | + afterText: false, |
| 146 | + hideParams: 'randomString', |
| 147 | + ] |
| 148 | + ] |
| 149 | + def params = [:] |
| 150 | + |
| 151 | + when: |
| 152 | + new ValidationConfig(config, params) |
| 153 | + def stdout = capture |
| 154 | + .toString() |
| 155 | + .readLines() |
| 156 | + .findResults { it.contains('WARN') ? it : null } |
| 157 | + |
| 158 | + then: |
| 159 | + noExceptionThrown() |
| 160 | + stdout |
| 161 | + } |
| 162 | +} |
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